Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Col6a1Q04857 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Col6a1Q04857 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Col6a1Q04857 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Col6a1Q04857 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col6a1Q04857 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col6a1Q04857 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col6a1Q04857 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col6a1Q04857 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col6a1Q04857 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Col6a1Q04857 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col6a1Q04857 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC13.81□□□□□ -0.2
Col6a1Q04857 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col6a1Q04857 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Col6a1Q04857 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC13.81□□□□□ -0.2
Col6a1Q04857 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col6a1Q04857 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
Col6a1Q04857 Gm23363-201ENSMUST00000175024 79 ntBASIC13.81□□□□□ -0.2
Col6a1Q04857 Gm8365-201ENSMUST00000197334 648 ntBASIC13.81□□□□□ -0.2
Col6a1Q04857 AC167013.1-201ENSMUST00000228592 202 ntBASIC13.81□□□□□ -0.2
Col6a1Q04857 Rln1-201ENSMUST00000044143 745 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col6a1Q04857 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col6a1Q04857 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col6a1Q04857 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC13.81□□□□□ -0.2
Col6a1Q04857 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col6a1Q04857 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Col6a1Q04857 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col6a1Q04857 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Col6a1Q04857 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC13.81□□□□□ -0.2
Col6a1Q04857 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col6a1Q04857 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col6a1Q04857 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC13.81□□□□□ -0.2
Col6a1Q04857 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col6a1Q04857 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col6a1Q04857 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col6a1Q04857 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Col6a1Q04857 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col6a1Q04857 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col6a1Q04857 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Col6a1Q04857 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col6a1Q04857 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col6a1Q04857 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col6a1Q04857 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col6a1Q04857 AC122197.2-201ENSMUST00000219196 1635 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col6a1Q04857 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col6a1Q04857 Gm23949-201ENSMUST00000104027 127 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Col6a1Q04857 Gm12165-201ENSMUST00000117047 342 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Gm14460-201ENSMUST00000121511 639 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Gm11675-201ENSMUST00000121873 832 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Gm17391-201ENSMUST00000171036 126 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Gm29615-201ENSMUST00000185371 697 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Gm28224-201ENSMUST00000186078 697 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Gm29001-201ENSMUST00000186177 697 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Gm28292-201ENSMUST00000186593 697 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Gm28101-201ENSMUST00000187608 697 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Gm29076-201ENSMUST00000187689 697 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Gm28302-201ENSMUST00000187931 697 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Gm28646-201ENSMUST00000188220 697 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Gm28205-201ENSMUST00000189177 697 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Gm29032-201ENSMUST00000189797 697 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Gm28695-201ENSMUST00000190300 697 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Gm37448-201ENSMUST00000192795 697 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Gm18893-201ENSMUST00000198416 943 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col6a1Q04857 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col6a1Q04857 Krtap19-9b-201ENSMUST00000077715 461 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Col6a1Q04857 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col6a1Q04857 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col6a1Q04857 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col6a1Q04857 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col6a1Q04857 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Col6a1Q04857 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col6a1Q04857 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Col6a1Q04857 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col6a1Q04857 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC13.8□□□□□ -0.2
Col6a1Q04857 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC13.8□□□□□ -0.2
Col6a1Q04857 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col6a1Q04857 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col6a1Q04857 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC13.8□□□□□ -0.2
Col6a1Q04857 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Col6a1Q04857 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Col6a1Q04857 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC13.79□□□□□ -0.2
Col6a1Q04857 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC13.79□□□□□ -0.2
Col6a1Q04857 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC13.79□□□□□ -0.2
Col6a1Q04857 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Gm9061-201ENSMUST00000182707 1006 ntBASIC13.79□□□□□ -0.2
Col6a1Q04857 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC13.79□□□□□ -0.2
Col6a1Q04857 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC13.79□□□□□ -0.2
Col6a1Q04857 Gm43916-201ENSMUST00000205062 967 ntBASIC13.79□□□□□ -0.2
Col6a1Q04857 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC13.79□□□□□ -0.2
Col6a1Q04857 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 493.9 ms