Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Shmt1P50431 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Shmt1P50431 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Shmt1P50431 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Shmt1P50431 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Shmt1P50431 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Shmt1P50431 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC13.2□□□□□ -0.3
Shmt1P50431 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC13.2□□□□□ -0.3
Shmt1P50431 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
Shmt1P50431 Gm23119-201ENSMUST00000158610 140 ntBASIC13.2□□□□□ -0.3
Shmt1P50431 Gm16570-201ENSMUST00000161951 436 ntBASIC13.2□□□□□ -0.3
Shmt1P50431 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Shmt1P50431 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Shmt1P50431 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC13.2□□□□□ -0.3
Shmt1P50431 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC13.2□□□□□ -0.3
Shmt1P50431 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC13.2□□□□□ -0.3
Shmt1P50431 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Shmt1P50431 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC13.2□□□□□ -0.3
Shmt1P50431 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Shmt1P50431 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Shmt1P50431 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Shmt1P50431 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Shmt1P50431 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Shmt1P50431 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Shmt1P50431 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Shmt1P50431 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Shmt1P50431 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Shmt1P50431 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Shmt1P50431 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
Shmt1P50431 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Shmt1P50431 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Shmt1P50431 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Shmt1P50431 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Shmt1P50431 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Shmt1P50431 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Shmt1P50431 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Shmt1P50431 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
Shmt1P50431 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
Shmt1P50431 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC13.19□□□□□ -0.3
Shmt1P50431 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Shmt1P50431 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC13.19□□□□□ -0.3
Shmt1P50431 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Gm9083-201ENSMUST00000120423 819 ntBASIC13.19□□□□□ -0.3
Shmt1P50431 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC13.19□□□□□ -0.3
Shmt1P50431 Gm2383-201ENSMUST00000181461 807 ntBASIC13.19□□□□□ -0.3
Shmt1P50431 Gm3096-201ENSMUST00000185770 364 ntBASIC13.19□□□□□ -0.3
Shmt1P50431 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Shmt1P50431 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC13.19□□□□□ -0.3
Shmt1P50431 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Shmt1P50431 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC13.18□□□□□ -0.3
Shmt1P50431 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
Shmt1P50431 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC13.18□□□□□ -0.3
Shmt1P50431 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Shmt1P50431 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Shmt1P50431 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Gm12012-201ENSMUST00000118857 1066 ntBASIC13.18□□□□□ -0.3
Shmt1P50431 Gm12715-201ENSMUST00000121430 1128 ntBASIC13.18□□□□□ -0.3
Shmt1P50431 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Shmt1P50431 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC13.18□□□□□ -0.3
Shmt1P50431 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC13.18□□□□□ -0.3
Shmt1P50431 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC13.18□□□□□ -0.3
Shmt1P50431 AA914427-201ENSMUST00000193194 1166 ntBASIC13.18□□□□□ -0.3
Shmt1P50431 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Shmt1P50431 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC13.18□□□□□ -0.3
Shmt1P50431 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC13.18□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms