Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Ercc3P49135 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ercc3P49135 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Ercc3P49135 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
Ercc3P49135 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ercc3P49135 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ercc3P49135 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Ercc3P49135 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ercc3P49135 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ercc3P49135 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Ercc3P49135 Gm13342-201ENSMUST00000121055 207 ntBASIC14.84□□□□□ -0.03
Ercc3P49135 Gm5863-201ENSMUST00000121760 1008 ntBASIC14.84□□□□□ -0.03
Ercc3P49135 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Ercc3P49135 AC154305.4-201ENSMUST00000224520 614 ntBASIC14.84□□□□□ -0.03
Ercc3P49135 Rassf8-202ENSMUST00000058538 1131 ntBASIC14.84□□□□□ -0.03
Ercc3P49135 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC14.84□□□□□ -0.03
Ercc3P49135 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ercc3P49135 Gm4366-201ENSMUST00000201488 1342 ntBASIC14.84□□□□□ -0.03
Ercc3P49135 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ercc3P49135 Paupar-201ENSMUST00000194826 3482 ntBASIC14.84□□□□□ -0.03
Ercc3P49135 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ercc3P49135 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ercc3P49135 Gm37737-201ENSMUST00000195013 1638 ntBASIC14.84□□□□□ -0.03
Ercc3P49135 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ercc3P49135 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC14.84□□□□□ -0.03
Ercc3P49135 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Ercc3P49135 Gm45053-201ENSMUST00000206112 2499 ntBASIC14.84□□□□□ -0.03
Ercc3P49135 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ercc3P49135 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Ercc3P49135 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Ercc3P49135 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
Ercc3P49135 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Ercc3P49135 Gm44758-201ENSMUST00000206096 2068 ntBASIC14.83□□□□□ -0.03
Ercc3P49135 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ercc3P49135 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ercc3P49135 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ercc3P49135 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC14.83□□□□□ -0.04
Ercc3P49135 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC14.83□□□□□ -0.04
Ercc3P49135 Gm8018-201ENSMUST00000173536 789 ntBASIC14.83□□□□□ -0.04
Ercc3P49135 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Ercc3P49135 Gm5950-201ENSMUST00000213337 772 ntBASIC14.83□□□□□ -0.04
Ercc3P49135 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC14.83□□□□□ -0.04
Ercc3P49135 Gm45925-201ENSMUST00000218882 744 ntBASIC14.83□□□□□ -0.04
Ercc3P49135 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
Ercc3P49135 AC125209.1-201ENSMUST00000225812 766 ntBASIC14.83□□□□□ -0.04
Ercc3P49135 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ercc3P49135 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ercc3P49135 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ercc3P49135 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ercc3P49135 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ercc3P49135 AC167669.2-201ENSMUST00000224417 1620 ntBASIC14.83□□□□□ -0.04
Ercc3P49135 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC14.83□□□□□ -0.04
Ercc3P49135 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Ercc3P49135 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ercc3P49135 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ercc3P49135 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC14.83□□□□□ -0.04
Ercc3P49135 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ercc3P49135 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ercc3P49135 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC14.83□□□□□ -0.04
Ercc3P49135 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ercc3P49135 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Ercc3P49135 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC14.82□□□□□ -0.04
Ercc3P49135 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Ercc3P49135 Gm45743-201ENSMUST00000212701 2795 ntBASIC14.82□□□□□ -0.04
Ercc3P49135 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 AC123834.1-201ENSMUST00000225346 2043 ntBASIC14.82□□□□□ -0.04
Ercc3P49135 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Ercc3P49135 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
Ercc3P49135 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC14.82□□□□□ -0.04
Ercc3P49135 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC14.82□□□□□ -0.04
Ercc3P49135 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC14.82□□□□□ -0.04
Ercc3P49135 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Ercc3P49135 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC14.82□□□□□ -0.04
Ercc3P49135 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 AC166095.1-201ENSMUST00000223731 1241 ntBASIC14.82□□□□□ -0.04
Ercc3P49135 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Ercc3P49135 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 Gm27196-201ENSMUST00000184787 2582 ntBASIC14.82□□□□□ -0.04
Ercc3P49135 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 Gm45266-201ENSMUST00000210111 2173 ntBASIC14.82□□□□□ -0.04
Ercc3P49135 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC14.82□□□□□ -0.04
Ercc3P49135 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ercc3P49135 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 159.2 ms