Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm28323-201ENSMUST00000186817 2499 ntBASIC14.48□□□□□ -0.09
Traf1P39428 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC14.48□□□□□ -0.09
Traf1P39428 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Traf1P39428 Gm12314-201ENSMUST00000118104 538 ntBASIC14.48□□□□□ -0.09
Traf1P39428 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Traf1P39428 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Traf1P39428 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Traf1P39428 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Traf1P39428 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Traf1P39428 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Traf1P39428 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Traf1P39428 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Traf1P39428 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Traf1P39428 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Traf1P39428 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Traf1P39428 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Gm42480-201ENSMUST00000198434 2595 ntBASIC14.47□□□□□ -0.09
Traf1P39428 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC14.47□□□□□ -0.09
Traf1P39428 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC14.47□□□□□ -0.09
Traf1P39428 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Gm38376-201ENSMUST00000195493 2253 ntBASIC14.47□□□□□ -0.09
Traf1P39428 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Traf1P39428 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC14.47□□□□□ -0.09
Traf1P39428 AC113441.2-201ENSMUST00000221538 1468 ntBASIC14.47□□□□□ -0.09
Traf1P39428 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
Traf1P39428 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC14.47□□□□□ -0.09
Traf1P39428 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC14.47□□□□□ -0.09
Traf1P39428 Rmrp-201ENSMUST00000157463 271 ntBASIC14.47□□□□□ -0.09
Traf1P39428 Gm26361-201ENSMUST00000158868 186 ntBASIC14.47□□□□□ -0.09
Traf1P39428 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC14.47□□□□□ -0.09
Traf1P39428 Gm44651-201ENSMUST00000207343 372 ntBASIC14.47□□□□□ -0.09
Traf1P39428 AL732506.1-201ENSMUST00000226420 281 ntBASIC14.47□□□□□ -0.09
Traf1P39428 Gm10371-202ENSMUST00000228010 1081 ntBASIC14.47□□□□□ -0.09
Traf1P39428 AC123665.1-201ENSMUST00000228204 438 ntBASIC14.47□□□□□ -0.09
Traf1P39428 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC14.47□□□□□ -0.09
Traf1P39428 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Traf1P39428 AC126444.1-201ENSMUST00000225938 1768 ntBASIC14.47□□□□□ -0.09
Traf1P39428 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Traf1P39428 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
Traf1P39428 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Traf1P39428 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
Traf1P39428 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Traf1P39428 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Traf1P39428 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Traf1P39428 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Traf1P39428 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Traf1P39428 Gm44241-201ENSMUST00000203230 1662 ntBASIC14.46□□□□□ -0.09
Traf1P39428 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Traf1P39428 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Traf1P39428 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC14.46□□□□□ -0.09
Traf1P39428 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Traf1P39428 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Traf1P39428 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Traf1P39428 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Traf1P39428 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Traf1P39428 Gm2606-201ENSMUST00000100754 1002 ntBASIC14.46□□□□□ -0.09
Traf1P39428 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
Traf1P39428 Gm12997-201ENSMUST00000120207 640 ntBASIC14.46□□□□□ -0.09
Traf1P39428 Gm13315-201ENSMUST00000120376 991 ntBASIC14.46□□□□□ -0.09
Traf1P39428 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Traf1P39428 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC14.46□□□□□ -0.09
Traf1P39428 Gm28882-201ENSMUST00000185504 314 ntBASIC14.46□□□□□ -0.09
Traf1P39428 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Traf1P39428 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC14.46□□□□□ -0.09
Traf1P39428 Gm7293-201ENSMUST00000216682 1007 ntBASIC14.46□□□□□ -0.09
Traf1P39428 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC14.46□□□□□ -0.09
Traf1P39428 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Traf1P39428 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
Traf1P39428 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Traf1P39428 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Traf1P39428 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Traf1P39428 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Traf1P39428 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
Traf1P39428 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC14.46□□□□□ -0.1
Traf1P39428 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
Traf1P39428 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
Traf1P39428 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Traf1P39428 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
Traf1P39428 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Traf1P39428 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Traf1P39428 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Traf1P39428 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 52.6 ms