Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 AC022775.2-201ENSMUST00000227885 646 ntBASIC13.5□□□□□ -0.25
RaraP11416 AC167013.1-201ENSMUST00000228592 202 ntBASIC13.5□□□□□ -0.25
RaraP11416 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
RaraP11416 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
RaraP11416 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
RaraP11416 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
RaraP11416 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC13.5□□□□□ -0.25
RaraP11416 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC13.5□□□□□ -0.25
RaraP11416 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC13.49□□□□□ -0.25
RaraP11416 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC13.49□□□□□ -0.25
RaraP11416 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
RaraP11416 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
RaraP11416 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC13.49□□□□□ -0.25
RaraP11416 Gm44831-201ENSMUST00000208469 2989 ntBASIC13.49□□□□□ -0.25
RaraP11416 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
RaraP11416 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Gm16177-201ENSMUST00000120728 718 ntBASIC13.49□□□□□ -0.25
RaraP11416 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC13.49□□□□□ -0.25
RaraP11416 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC13.49□□□□□ -0.25
RaraP11416 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC13.49□□□□□ -0.25
RaraP11416 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
RaraP11416 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Wdyhv1-206ENSMUST00000227142 786 ntBASIC13.49□□□□□ -0.25
RaraP11416 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 Gm37827-201ENSMUST00000194486 1542 ntBASIC13.49□□□□□ -0.25
RaraP11416 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RaraP11416 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC13.49□□□□□ -0.25
RaraP11416 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC13.48□□□□□ -0.25
RaraP11416 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC13.48□□□□□ -0.25
RaraP11416 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
RaraP11416 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC13.48□□□□□ -0.25
RaraP11416 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
RaraP11416 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC13.48□□□□□ -0.25
RaraP11416 Gm11597-201ENSMUST00000121423 964 ntBASIC13.48□□□□□ -0.25
RaraP11416 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Gm26927-201ENSMUST00000182385 965 ntBASIC13.48□□□□□ -0.25
RaraP11416 Gm29649-201ENSMUST00000185649 419 ntBASIC13.48□□□□□ -0.25
RaraP11416 Ighv1-60-201ENSMUST00000195816 405 ntBASIC13.48□□□□□ -0.25
RaraP11416 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC13.48□□□□□ -0.25
RaraP11416 Tyms-ps-201ENSMUST00000219550 915 ntBASIC13.48□□□□□ -0.25
RaraP11416 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC13.48□□□□□ -0.25
RaraP11416 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RaraP11416 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms