Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Col5a1O88207 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 Gm2420-201ENSMUST00000119864 2149 ntBASIC11.11□□□□□ -0.63
Col5a1O88207 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Col5a1O88207 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Col5a1O88207 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Col5a1O88207 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC11.11□□□□□ -0.63
Col5a1O88207 Nop16-202ENSMUST00000148222 790 ntTSL 5 BASIC11.11□□□□□ -0.63
Col5a1O88207 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC11.11□□□□□ -0.63
Col5a1O88207 Gm18159-201ENSMUST00000174516 1070 ntBASIC11.11□□□□□ -0.63
Col5a1O88207 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 1700088E04Rik-210ENSMUST00000190509 871 ntTSL 5 BASIC11.11□□□□□ -0.63
Col5a1O88207 Gm43184-201ENSMUST00000197247 542 ntBASIC11.11□□□□□ -0.63
Col5a1O88207 Gm43778-201ENSMUST00000199438 199 ntBASIC11.11□□□□□ -0.63
Col5a1O88207 Gm43275-201ENSMUST00000202053 1020 ntBASIC11.11□□□□□ -0.63
Col5a1O88207 Scg5-201ENSMUST00000024005 1208 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Col5a1O88207 Nat8f6-201ENSMUST00000087656 925 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 Gm5544-201ENSMUST00000098828 891 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC11.11□□□□□ -0.63
Col5a1O88207 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Col5a1O88207 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC11.11□□□□□ -0.63
Col5a1O88207 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Col5a1O88207 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Col5a1O88207 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Col5a1O88207 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Col5a1O88207 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC11.1□□□□□ -0.63
Col5a1O88207 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Col5a1O88207 Gm11509-201ENSMUST00000117358 325 ntBASIC11.1□□□□□ -0.63
Col5a1O88207 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC11.1□□□□□ -0.63
Col5a1O88207 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC11.1□□□□□ -0.63
Col5a1O88207 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC11.1□□□□□ -0.63
Col5a1O88207 Gm4726-201ENSMUST00000135604 736 ntBASIC11.1□□□□□ -0.63
Col5a1O88207 Gm6019-201ENSMUST00000148369 736 ntBASIC11.1□□□□□ -0.63
Col5a1O88207 BC016548-202ENSMUST00000153797 805 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
Col5a1O88207 Gm28388-201ENSMUST00000186262 437 ntBASIC11.1□□□□□ -0.63
Col5a1O88207 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC11.1□□□□□ -0.63
Col5a1O88207 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC11.1□□□□□ -0.63
Col5a1O88207 Commd4-201ENSMUST00000065358 858 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Gm10288-201ENSMUST00000084614 537 ntBASIC11.1□□□□□ -0.63
Col5a1O88207 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC11.1□□□□□ -0.63
Col5a1O88207 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Col5a1O88207 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Col5a1O88207 Nxf2-202ENSMUST00000113187 2316 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Col5a1O88207 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC11.09□□□□□ -0.63
Col5a1O88207 Gm23596-201ENSMUST00000104304 132 ntBASIC11.09□□□□□ -0.63
Col5a1O88207 Gm4879-201ENSMUST00000122190 1272 ntBASIC11.09□□□□□ -0.63
Col5a1O88207 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC11.09□□□□□ -0.63
Col5a1O88207 Ighv2-1-201ENSMUST00000170946 353 ntBASIC11.09□□□□□ -0.63
Col5a1O88207 Mir7677-201ENSMUST00000184226 67 ntBASIC11.09□□□□□ -0.63
Col5a1O88207 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Gm42629-201ENSMUST00000199063 1102 ntBASIC11.09□□□□□ -0.63
Col5a1O88207 Eny2-204ENSMUST00000226827 558 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Col5a1O88207 Gm10135-201ENSMUST00000043711 252 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Col5a1O88207 Rpl15-201ENSMUST00000079419 883 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
Col5a1O88207 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col5a1O88207 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms