Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC10.33□□□□□ -0.76
Hmgb3O54879 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC10.33□□□□□ -0.76
Hmgb3O54879 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Cdh23-205ENSMUST00000105464 11090 ntAPPRIS P2 TSL 5 BASIC10.33□□□□□ -0.76
Hmgb3O54879 Agpat3-205ENSMUST00000105390 3513 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
Hmgb3O54879 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Gm6447-201ENSMUST00000118905 835 ntBASIC10.33□□□□□ -0.76
Hmgb3O54879 Gm15693-201ENSMUST00000120470 637 ntBASIC10.33□□□□□ -0.76
Hmgb3O54879 Gm38144-201ENSMUST00000192790 465 ntBASIC10.33□□□□□ -0.76
Hmgb3O54879 Gm37277-201ENSMUST00000194052 1111 ntBASIC10.33□□□□□ -0.76
Hmgb3O54879 Gm44124-201ENSMUST00000204159 472 ntBASIC10.33□□□□□ -0.76
Hmgb3O54879 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC10.33□□□□□ -0.76
Hmgb3O54879 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC10.33□□□□□ -0.76
Hmgb3O54879 AC159114.1-201ENSMUST00000220349 266 ntBASIC10.33□□□□□ -0.76
Hmgb3O54879 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
Hmgb3O54879 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC10.33□□□□□ -0.76
Hmgb3O54879 Gm5053-201ENSMUST00000208361 1678 ntBASIC10.33□□□□□ -0.76
Hmgb3O54879 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
Hmgb3O54879 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Hmgb3O54879 Gtf2i-202ENSMUST00000082057 4375 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Hmgb3O54879 Slc9a3-203ENSMUST00000221703 5118 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Hmgb3O54879 Spice1-201ENSMUST00000050897 4627 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Gm26584-201ENSMUST00000180551 3216 ntTSL 5 BASIC10.33□□□□□ -0.76
Hmgb3O54879 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Gm44094-201ENSMUST00000204703 2030 ntBASIC10.33□□□□□ -0.76
Hmgb3O54879 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 AC157950.1-201ENSMUST00000217561 2168 ntBASIC10.32□□□□□ -0.76
Hmgb3O54879 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC10.32□□□□□ -0.76
Hmgb3O54879 Acot11-202ENSMUST00000102762 5689 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Adcy7-201ENSMUST00000098521 5937 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Kat6b-207ENSMUST00000182855 6791 ntAPPRIS P2 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC10.32□□□□□ -0.76
Hmgb3O54879 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC10.32□□□□□ -0.76
Hmgb3O54879 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC10.32□□□□□ -0.76
Hmgb3O54879 Gm25144-201ENSMUST00000179561 110 ntBASIC10.32□□□□□ -0.76
Hmgb3O54879 Gm25352-201ENSMUST00000179815 110 ntBASIC10.32□□□□□ -0.76
Hmgb3O54879 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
Hmgb3O54879 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC10.32□□□□□ -0.76
Hmgb3O54879 Gm44985-201ENSMUST00000206202 1016 ntBASIC10.32□□□□□ -0.76
Hmgb3O54879 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC10.32□□□□□ -0.76
Hmgb3O54879 AC073947.2-201ENSMUST00000215888 1130 ntBASIC10.32□□□□□ -0.76
Hmgb3O54879 AC225888.1-201ENSMUST00000227184 728 ntBASIC10.32□□□□□ -0.76
Hmgb3O54879 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Pcdhga10-201ENSMUST00000193404 4732 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 AC154517.2-201ENSMUST00000220829 2458 ntBASIC10.32□□□□□ -0.76
Hmgb3O54879 1810041L15Rik-201ENSMUST00000080751 5917 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Fam120b-201ENSMUST00000055352 4518 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC10.32□□□□□ -0.76
Hmgb3O54879 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC10.32□□□□□ -0.76
Hmgb3O54879 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Gm43174-201ENSMUST00000195914 2445 ntBASIC10.32□□□□□ -0.76
Hmgb3O54879 Ank3-205ENSMUST00000092433 5072 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.76
Hmgb3O54879 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC10.31□□□□□ -0.76
Hmgb3O54879 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC10.31□□□□□ -0.76
Hmgb3O54879 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Astn1-201ENSMUST00000046110 7195 ntAPPRIS ALT2 TSL 1 (best) BASIC10.31□□□□□ -0.76
Hmgb3O54879 Gm5780-201ENSMUST00000217774 1834 ntBASIC10.31□□□□□ -0.76
Retrieved 100 of 76,532 protein–RNA pairs in 127.7 ms