Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Gm44270-201ENSMUST00000203084 1234 ntBASIC10.04□□□□□ -0.8
Chd6A3KFM7 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Tnnt3-213ENSMUST00000105952 1040 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Tnnt3-215ENSMUST00000105954 1052 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Tnnt3-216ENSMUST00000105955 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Tnnt3-218ENSMUST00000105958 1050 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Gm13094-201ENSMUST00000117930 409 ntBASIC10.04□□□□□ -0.8
Chd6A3KFM7 Chn2-209ENSMUST00000146114 1227 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Pdc-201ENSMUST00000165062 1246 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Tnnt3-225ENSMUST00000179658 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Akr1c18-201ENSMUST00000021635 1200 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC10.04□□□□□ -0.8
Chd6A3KFM7 AC166344.1-201ENSMUST00000223745 674 ntBASIC10.04□□□□□ -0.8
Chd6A3KFM7 2310057N15Rik-201ENSMUST00000054223 1028 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Rps3a2-201ENSMUST00000074245 792 ntBASIC10.04□□□□□ -0.8
Chd6A3KFM7 Rps3a3-201ENSMUST00000074680 795 ntBASIC10.04□□□□□ -0.8
Chd6A3KFM7 Tnnt3-202ENSMUST00000078497 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Gm26448-201ENSMUST00000082446 203 ntBASIC10.04□□□□□ -0.8
Chd6A3KFM7 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Chd6A3KFM7 Gm43721-201ENSMUST00000199677 2313 ntBASIC10.04□□□□□ -0.8
Chd6A3KFM7 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Unc119-202ENSMUST00000100755 933 ntTSL 2 BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Gm16553-201ENSMUST00000160490 716 ntTSL 3 BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Psme1-208ENSMUST00000174259 1112 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Mir8093-201ENSMUST00000185043 137 ntBASIC10.03□□□□□ -0.8
Chd6A3KFM7 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Gm5780-201ENSMUST00000217774 1834 ntBASIC10.03□□□□□ -0.8
Chd6A3KFM7 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 AC159649.2-201ENSMUST00000222984 3223 ntBASIC10.03□□□□□ -0.8
Chd6A3KFM7 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Gm15707-201ENSMUST00000118804 996 ntBASIC10.03□□□□□ -0.8
Chd6A3KFM7 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC10.03□□□□□ -0.8
Chd6A3KFM7 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Gm38297-201ENSMUST00000195122 1057 ntBASIC10.03□□□□□ -0.8
Chd6A3KFM7 Ighv8-10-201ENSMUST00000199579 358 ntBASIC10.03□□□□□ -0.8
Chd6A3KFM7 Gm18561-201ENSMUST00000206027 804 ntBASIC10.03□□□□□ -0.8
Chd6A3KFM7 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC10.03□□□□□ -0.8
Chd6A3KFM7 AC174797.2-201ENSMUST00000225835 165 ntBASIC10.03□□□□□ -0.8
Chd6A3KFM7 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Ppm1b-203ENSMUST00000112305 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Chd6A3KFM7 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
Chd6A3KFM7 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.8
Chd6A3KFM7 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.8
Chd6A3KFM7 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
Chd6A3KFM7 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.8
Chd6A3KFM7 Ifna9-201ENSMUST00000102807 573 ntAPPRIS P1 BASIC10.02□□□□□ -0.81
Chd6A3KFM7 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Chd6A3KFM7 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC10.02□□□□□ -0.81
Chd6A3KFM7 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Chd6A3KFM7 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Chd6A3KFM7 Gm9061-201ENSMUST00000182707 1006 ntBASIC10.02□□□□□ -0.81
Chd6A3KFM7 2610016A17Rik-201ENSMUST00000185211 474 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms