Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cpsf3Q9QXK7 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Cpsf3Q9QXK7 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cpsf3Q9QXK7 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Cpsf3Q9QXK7 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Cpsf3Q9QXK7 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
Cpsf3Q9QXK7 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC13.45□□□□□ -0.26
Cpsf3Q9QXK7 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Cpsf3Q9QXK7 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Cpsf3Q9QXK7 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Gm5884-201ENSMUST00000036712 1479 ntBASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Gm11930-201ENSMUST00000117788 190 ntBASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Gm15547-201ENSMUST00000122152 333 ntBASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Gm6015-201ENSMUST00000217493 1586 ntBASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Gm38385-201ENSMUST00000194454 2351 ntBASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Cpsf3Q9QXK7 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Gm8862-201ENSMUST00000198379 1346 ntBASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Gm17376-201ENSMUST00000166016 84 ntBASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Gm8885-201ENSMUST00000189382 598 ntBASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Ighv1-62-201ENSMUST00000193406 350 ntBASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Gm38319-201ENSMUST00000194537 1266 ntBASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Gm45003-201ENSMUST00000205875 2158 ntBASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Cpsf3Q9QXK7 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Gm4735-201ENSMUST00000138679 1302 ntBASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Gm5855-201ENSMUST00000200240 1305 ntBASIC13.42□□□□□ -0.26
Cpsf3Q9QXK7 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 60.9 ms