Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Gm11964-201ENSMUST00000120982 444 ntBASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Gm4366-201ENSMUST00000201488 1342 ntBASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Gm8617-201ENSMUST00000118796 2222 ntBASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Vps28Q9D1C8 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Vps28Q9D1C8 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC12.83□□□□□ -0.35
Vps28Q9D1C8 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Vps28Q9D1C8 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Vps28Q9D1C8 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.35
Vps28Q9D1C8 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
Vps28Q9D1C8 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Vps28Q9D1C8 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC12.83□□□□□ -0.35
Vps28Q9D1C8 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC12.83□□□□□ -0.35
Vps28Q9D1C8 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Gm28323-201ENSMUST00000186817 2499 ntBASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Gm11222-201ENSMUST00000119005 738 ntBASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Gm13875-201ENSMUST00000120162 282 ntBASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Gm8018-201ENSMUST00000173536 789 ntBASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Gm26956-201ENSMUST00000182176 986 ntBASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 AC093022.5-201ENSMUST00000226841 1079 ntBASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Vps28Q9D1C8 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Gm12058-201ENSMUST00000118614 437 ntBASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Gm13736-201ENSMUST00000119272 253 ntBASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Gm5863-201ENSMUST00000121760 1008 ntBASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Gm14381-201ENSMUST00000122105 414 ntBASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Gm5597-201ENSMUST00000182353 1193 ntBASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Gm21769-201ENSMUST00000211922 111 ntBASIC12.82□□□□□ -0.36
Vps28Q9D1C8 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 CT025533.2-201ENSMUST00000228715 1248 ntBASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Vps28Q9D1C8 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms