Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Gm6334-201ENSMUST00000207083 228 ntBASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Gm45865-201ENSMUST00000211815 945 ntBASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smc1aQ9CU62 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Smc1aQ9CU62 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Smc1aQ9CU62 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Smc1aQ9CU62 Gm37391-201ENSMUST00000194891 2318 ntBASIC14.02□□□□□ -0.16
Smc1aQ9CU62 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Smc1aQ9CU62 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Smc1aQ9CU62 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Smc1aQ9CU62 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC14.02□□□□□ -0.16
Smc1aQ9CU62 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Smc1aQ9CU62 Mir874-201ENSMUST00000104769 76 ntBASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Gm16202-201ENSMUST00000117532 544 ntBASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Gm5637-201ENSMUST00000153890 1119 ntBASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Gm10608-202ENSMUST00000213924 676 ntBASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Gm43273-201ENSMUST00000199649 2594 ntBASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Smc1aQ9CU62 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Gm1995-201ENSMUST00000220838 2602 ntBASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Gm43579-201ENSMUST00000202387 1307 ntBASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Mir877-201ENSMUST00000104738 85 ntBASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Gm6023-201ENSMUST00000118217 606 ntBASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Gm13786-201ENSMUST00000122371 333 ntBASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Mir3102-201ENSMUST00000175555 104 ntBASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Gm44069-201ENSMUST00000204898 506 ntBASIC14.01□□□□□ -0.17
Smc1aQ9CU62 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC14.01□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 53.3 ms