Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC11.84□□□□□ -0.51
Use1Q9CQ56 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Use1Q9CQ56 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Use1Q9CQ56 Gm9115-201ENSMUST00000120192 1348 ntBASIC11.84□□□□□ -0.51
Use1Q9CQ56 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Use1Q9CQ56 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Use1Q9CQ56 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Use1Q9CQ56 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Use1Q9CQ56 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.51
Use1Q9CQ56 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.51
Use1Q9CQ56 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Gm37660-201ENSMUST00000192754 1732 ntBASIC11.83□□□□□ -0.52
Use1Q9CQ56 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Use1Q9CQ56 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC11.83□□□□□ -0.52
Use1Q9CQ56 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Gm6652-201ENSMUST00000186414 1070 ntBASIC11.83□□□□□ -0.52
Use1Q9CQ56 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC11.83□□□□□ -0.52
Use1Q9CQ56 AC132317.1-201ENSMUST00000227227 962 ntBASIC11.83□□□□□ -0.52
Use1Q9CQ56 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Gm5053-201ENSMUST00000208361 1678 ntBASIC11.83□□□□□ -0.52
Use1Q9CQ56 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Use1Q9CQ56 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Use1Q9CQ56 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Gm13394-201ENSMUST00000121658 1000 ntBASIC11.82□□□□□ -0.52
Use1Q9CQ56 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Gm37497-201ENSMUST00000195830 798 ntBASIC11.82□□□□□ -0.52
Use1Q9CQ56 Gm44772-201ENSMUST00000207623 1191 ntBASIC11.82□□□□□ -0.52
Use1Q9CQ56 Gm17794-201ENSMUST00000220252 955 ntBASIC11.82□□□□□ -0.52
Use1Q9CQ56 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC11.82□□□□□ -0.52
Use1Q9CQ56 Gm2824-203ENSMUST00000226189 1228 ntBASIC11.82□□□□□ -0.52
Use1Q9CQ56 CT025535.1-201ENSMUST00000227172 491 ntBASIC11.82□□□□□ -0.52
Use1Q9CQ56 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Gm38376-201ENSMUST00000195493 2253 ntBASIC11.82□□□□□ -0.52
Use1Q9CQ56 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Gm9816-201ENSMUST00000122292 1414 ntBASIC11.82□□□□□ -0.52
Use1Q9CQ56 Retreg1-206ENSMUST00000228306 1430 ntBASIC11.82□□□□□ -0.52
Use1Q9CQ56 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Use1Q9CQ56 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Use1Q9CQ56 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC11.82□□□□□ -0.52
Use1Q9CQ56 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Use1Q9CQ56 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Use1Q9CQ56 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Use1Q9CQ56 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Use1Q9CQ56 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Use1Q9CQ56 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Use1Q9CQ56 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC11.81□□□□□ -0.52
Use1Q9CQ56 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Use1Q9CQ56 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 67.3 ms