Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Rprl1-202ENSMUST00000198476 238 ntBASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Gm44262-201ENSMUST00000204969 372 ntBASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Gm45691-201ENSMUST00000206905 1120 ntBASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Gm9445-201ENSMUST00000207454 1285 ntBASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Gm19208-201ENSMUST00000213861 912 ntBASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC13.3□□□□□ -0.28
Sf3b1Q99NB9 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Gm13296-201ENSMUST00000117854 997 ntBASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Gm15703-201ENSMUST00000120250 880 ntBASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Rmrp-201ENSMUST00000157463 271 ntBASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Gm43138-201ENSMUST00000199123 708 ntBASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Gzmn-202ENSMUST00000225535 989 ntBASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 AL732506.1-201ENSMUST00000226420 281 ntBASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Crry-ps-201ENSMUST00000079090 1309 ntBASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sf3b1Q99NB9 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Gm11597-201ENSMUST00000121423 964 ntBASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Gm8385-201ENSMUST00000058999 643 ntBASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Gm45495-201ENSMUST00000200940 1700 ntBASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 AC125108.1-201ENSMUST00000218986 2330 ntBASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sf3b1Q99NB9 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Sf3b1Q99NB9 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Sf3b1Q99NB9 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
Sf3b1Q99NB9 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms