Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 AC126257.2-201ENSMUST00000215507 2300 ntBASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Gm10686-201ENSMUST00000215389 3247 ntBASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Gm22189-201ENSMUST00000103822 86 ntBASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Gm44397-201ENSMUST00000195950 113 ntBASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 AC154527.2-201ENSMUST00000225256 1466 ntBASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Btrc-209ENSMUST00000224478 2194 ntBASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Jaml-201ENSMUST00000050020 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Gm38055-201ENSMUST00000195353 2217 ntBASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Ccdc28bQ8CEG5 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Olfr5-202ENSMUST00000209866 2980 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Mir339-201ENSMUST00000083659 96 ntBASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Tmem246-201ENSMUST00000042750 2989 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Gm42913-201ENSMUST00000197936 1853 ntBASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Ftsj1-201ENSMUST00000033513 3425 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28bQ8CEG5 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28bQ8CEG5 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC12.35□□□□□ -0.43
Ccdc28bQ8CEG5 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28bQ8CEG5 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
Ccdc28bQ8CEG5 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC12.35□□□□□ -0.43
Ccdc28bQ8CEG5 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28bQ8CEG5 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28bQ8CEG5 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28bQ8CEG5 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
Ccdc28bQ8CEG5 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28bQ8CEG5 Dbh-201ENSMUST00000000910 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28bQ8CEG5 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28bQ8CEG5 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28bQ8CEG5 Gm14921-201ENSMUST00000118643 908 ntBASIC12.35□□□□□ -0.43
Ccdc28bQ8CEG5 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28bQ8CEG5 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms