Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Otud7b-202ENSMUST00000090785 8101 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Gm26185-201ENSMUST00000157692 266 ntBASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Gm2383-201ENSMUST00000181461 807 ntBASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 AC022775.2-201ENSMUST00000227885 646 ntBASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Vps53Q8CCB4 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Vps53Q8CCB4 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Vps53Q8CCB4 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Vps53Q8CCB4 Gm42840-201ENSMUST00000200303 2251 ntBASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Gm9431-201ENSMUST00000119765 1051 ntBASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Gm16479-201ENSMUST00000121706 932 ntBASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Gm4819-201ENSMUST00000182170 1009 ntBASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Gm3890-201ENSMUST00000182416 207 ntBASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Mir7070-201ENSMUST00000183657 86 ntBASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Gm4768-201ENSMUST00000206199 686 ntBASIC14.58□□□□□ -0.08
Vps53Q8CCB4 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Gm19163-201ENSMUST00000223313 780 ntBASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Gm14608-201ENSMUST00000120030 1553 ntBASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Vps53Q8CCB4 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Gm12291-201ENSMUST00000121627 311 ntBASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Mir3547-201ENSMUST00000175461 88 ntBASIC14.57□□□□□ -0.08
Vps53Q8CCB4 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 AC123834.1-201ENSMUST00000225346 2043 ntBASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Vps53Q8CCB4 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps53Q8CCB4 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps53Q8CCB4 Dcaf17-209ENSMUST00000154704 7739 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps53Q8CCB4 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps53Q8CCB4 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Vps53Q8CCB4 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms