Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Gm5939-201ENSMUST00000119613 2874 ntBASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Ecsit-204ENSMUST00000180180 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Gm5909-201ENSMUST00000119768 1281 ntBASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Gm17812-201ENSMUST00000204935 318 ntBASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Rps2-ps12-201ENSMUST00000214262 785 ntBASIC21.73■■□□□ 1.07
Trim41Q5NCC3 CT009713.8-202ENSMUST00000224732 385 ntBASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim41Q5NCC3 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Gm8617-201ENSMUST00000118796 2222 ntBASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Gm11354-201ENSMUST00000121974 422 ntBASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Gm45717-201ENSMUST00000211129 495 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Gm9111-201ENSMUST00000219394 709 ntBASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim41Q5NCC3 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 Gm24231-201ENSMUST00000104315 133 ntBASIC21.71■■□□□ 1.07
Trim41Q5NCC3 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 Znrd1-202ENSMUST00000172518 710 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 Gm16973-201ENSMUST00000180682 1299 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 Gm9230-201ENSMUST00000188228 532 ntBASIC21.71■■□□□ 1.07
Trim41Q5NCC3 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 Gm19091-201ENSMUST00000208120 978 ntBASIC21.71■■□□□ 1.07
Trim41Q5NCC3 Gm44953-201ENSMUST00000208745 1286 ntBASIC21.71■■□□□ 1.07
Trim41Q5NCC3 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 1810009A15Rik-201ENSMUST00000096251 806 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 Retreg1-206ENSMUST00000228306 1430 ntBASIC21.71■■□□□ 1.07
Trim41Q5NCC3 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim41Q5NCC3 Rasl12-201ENSMUST00000085453 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Trim41Q5NCC3 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim41Q5NCC3 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
Trim41Q5NCC3 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Trim41Q5NCC3 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim41Q5NCC3 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim41Q5NCC3 Gm7114-201ENSMUST00000190159 1789 ntBASIC21.7■■□□□ 1.06
Trim41Q5NCC3 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC21.7■■□□□ 1.06
Trim41Q5NCC3 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim41Q5NCC3 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Trim41Q5NCC3 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Trim41Q5NCC3 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Trim41Q5NCC3 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Trim41Q5NCC3 Gm9022-201ENSMUST00000182482 992 ntBASIC21.7■■□□□ 1.06
Trim41Q5NCC3 Gm42626-201ENSMUST00000196866 1148 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Trim41Q5NCC3 Gm45079-201ENSMUST00000205627 461 ntTSL 3 BASIC21.7■■□□□ 1.06
Trim41Q5NCC3 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC21.7■■□□□ 1.06
Trim41Q5NCC3 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC21.7■■□□□ 1.06
Trim41Q5NCC3 AC154248.2-201ENSMUST00000221964 659 ntTSL 5 BASIC21.7■■□□□ 1.06
Trim41Q5NCC3 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim41Q5NCC3 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Trim41Q5NCC3 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim41Q5NCC3 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim41Q5NCC3 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms