Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Gm24231-201ENSMUST00000104315 133 ntBASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Gm29396-201ENSMUST00000185659 716 ntBASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Gm44974-201ENSMUST00000206387 1279 ntBASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Olfr284-202ENSMUST00000206647 966 ntBASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Upf3bQ3ULL6 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.27
Upf3bQ3ULL6 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Gm20554-201ENSMUST00000177421 2352 ntBASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Gm13315-201ENSMUST00000120376 991 ntBASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Gm11597-201ENSMUST00000121423 964 ntBASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Gm14760-201ENSMUST00000121831 999 ntBASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Gm8801-201ENSMUST00000173255 1064 ntBASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Gm27501-201ENSMUST00000183599 107 ntBASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Gm37489-201ENSMUST00000191883 159 ntBASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Gm18935-201ENSMUST00000212692 664 ntBASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Gm7046-201ENSMUST00000221351 977 ntBASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 AC169036.1-201ENSMUST00000227994 296 ntBASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Upf3bQ3ULL6 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Gm12058-201ENSMUST00000118614 437 ntBASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Upf3bQ3ULL6 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Gm42480-201ENSMUST00000198434 2595 ntBASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Upf3bQ3ULL6 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms