Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC10.7□□□□□ -0.7
Col8a1Q00780 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC10.7□□□□□ -0.7
Col8a1Q00780 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC10.7□□□□□ -0.7
Col8a1Q00780 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC10.7□□□□□ -0.7
Col8a1Q00780 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC10.7□□□□□ -0.7
Col8a1Q00780 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Gm27627-201ENSMUST00000183644 150 ntBASIC10.7□□□□□ -0.7
Col8a1Q00780 Gm37246-201ENSMUST00000192665 835 ntBASIC10.7□□□□□ -0.7
Col8a1Q00780 Fabp6-201ENSMUST00000020672 479 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
Col8a1Q00780 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC10.7□□□□□ -0.7
Col8a1Q00780 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Col8a1Q00780 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Gm14058-201ENSMUST00000116082 735 ntBASIC10.69□□□□□ -0.7
Col8a1Q00780 Gm6506-201ENSMUST00000119775 1136 ntBASIC10.69□□□□□ -0.7
Col8a1Q00780 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC10.69□□□□□ -0.7
Col8a1Q00780 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC10.69□□□□□ -0.7
Col8a1Q00780 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
Col8a1Q00780 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC10.69□□□□□ -0.7
Col8a1Q00780 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC10.69□□□□□ -0.7
Col8a1Q00780 Gm43916-201ENSMUST00000205062 967 ntBASIC10.69□□□□□ -0.7
Col8a1Q00780 Gm44772-201ENSMUST00000207623 1191 ntBASIC10.69□□□□□ -0.7
Col8a1Q00780 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC10.69□□□□□ -0.7
Col8a1Q00780 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC10.69□□□□□ -0.7
Col8a1Q00780 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
Col8a1Q00780 Gm21027-201ENSMUST00000219300 1236 ntBASIC10.69□□□□□ -0.7
Col8a1Q00780 AC108416.1-202ENSMUST00000228927 1201 ntBASIC10.69□□□□□ -0.7
Col8a1Q00780 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Gm9873-201ENSMUST00000063891 1097 ntBASIC10.69□□□□□ -0.7
Col8a1Q00780 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC10.69□□□□□ -0.7
Col8a1Q00780 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC10.69□□□□□ -0.7
Col8a1Q00780 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 AC139350.1-201ENSMUST00000227064 1594 ntBASIC10.69□□□□□ -0.7
Col8a1Q00780 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Col8a1Q00780 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC10.69□□□□□ -0.7
Col8a1Q00780 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
Col8a1Q00780 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC10.68□□□□□ -0.7
Col8a1Q00780 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
Col8a1Q00780 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC10.68□□□□□ -0.7
Col8a1Q00780 Cela3b-201ENSMUST00000102522 926 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 64.9 ms