Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Gm14127-201ENSMUST00000117906 678 ntBASIC11.32□□□□□ -0.6
Rfx3P48381 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Gm26185-201ENSMUST00000157692 266 ntBASIC11.32□□□□□ -0.6
Rfx3P48381 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC11.32□□□□□ -0.6
Rfx3P48381 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Gm18916-201ENSMUST00000198264 1246 ntBASIC11.32□□□□□ -0.6
Rfx3P48381 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC11.32□□□□□ -0.6
Rfx3P48381 Gm2824-203ENSMUST00000226189 1228 ntBASIC11.32□□□□□ -0.6
Rfx3P48381 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC11.32□□□□□ -0.6
Rfx3P48381 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Rfx3P48381 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC11.32□□□□□ -0.6
Rfx3P48381 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC11.32□□□□□ -0.6
Rfx3P48381 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Rfx3P48381 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC11.31□□□□□ -0.6
Rfx3P48381 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Rfx3P48381 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC11.31□□□□□ -0.6
Rfx3P48381 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Gm12203-201ENSMUST00000118235 598 ntBASIC11.31□□□□□ -0.6
Rfx3P48381 Gm13369-201ENSMUST00000119442 987 ntBASIC11.31□□□□□ -0.6
Rfx3P48381 Gm12209-201ENSMUST00000120089 596 ntBASIC11.31□□□□□ -0.6
Rfx3P48381 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC11.31□□□□□ -0.6
Rfx3P48381 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC11.31□□□□□ -0.6
Rfx3P48381 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC11.31□□□□□ -0.6
Rfx3P48381 Gm8652-201ENSMUST00000181363 964 ntBASIC11.31□□□□□ -0.6
Rfx3P48381 Gm37497-201ENSMUST00000195830 798 ntBASIC11.31□□□□□ -0.6
Rfx3P48381 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Rfx3P48381 Gm43416-201ENSMUST00000201916 1015 ntBASIC11.31□□□□□ -0.6
Rfx3P48381 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Gm43721-201ENSMUST00000199677 2313 ntBASIC11.31□□□□□ -0.6
Rfx3P48381 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC11.31□□□□□ -0.6
Rfx3P48381 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Gm37437-201ENSMUST00000194451 1937 ntBASIC11.31□□□□□ -0.6
Rfx3P48381 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC11.31□□□□□ -0.6
Rfx3P48381 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Rfx3P48381 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC11.3□□□□□ -0.6
Rfx3P48381 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC11.3□□□□□ -0.6
Rfx3P48381 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Rfx3P48381 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Gm43727-201ENSMUST00000198021 2647 ntBASIC11.3□□□□□ -0.6
Rfx3P48381 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 CT573086.2-201ENSMUST00000227277 4992 ntBASIC11.3□□□□□ -0.6
Rfx3P48381 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC11.3□□□□□ -0.6
Rfx3P48381 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Rfx3P48381 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Rfx3P48381 Gm11637-201ENSMUST00000120601 592 ntBASIC11.3□□□□□ -0.6
Rfx3P48381 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Rfx3P48381 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC11.3□□□□□ -0.6
Rfx3P48381 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms