Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
Col4a1P02463 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC15.08■□□□□ 0
Col4a1P02463 Mir7076-201ENSMUST00000183519 74 ntBASIC15.08■□□□□ 0
Col4a1P02463 Gm5852-201ENSMUST00000194119 1021 ntBASIC15.08■□□□□ 0
Col4a1P02463 Gm5542-201ENSMUST00000195485 1089 ntBASIC15.08■□□□□ 0
Col4a1P02463 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col4a1P02463 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col4a1P02463 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC15.08■□□□□ 0
Col4a1P02463 Map1b-203ENSMUST00000223725 2669 ntBASIC15.08■□□□□ 0
Col4a1P02463 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Col4a1P02463 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC15.08■□□□□ 0
Col4a1P02463 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Col4a1P02463 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Col4a1P02463 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col4a1P02463 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col4a1P02463 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col4a1P02463 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col4a1P02463 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC15.07■□□□□ 0
Col4a1P02463 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Col4a1P02463 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col4a1P02463 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC15.07■□□□□ 0
Col4a1P02463 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC15.07■□□□□ 0
Col4a1P02463 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col4a1P02463 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC15.07■□□□□ 0
Col4a1P02463 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC15.07■□□□□ 0
Col4a1P02463 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col4a1P02463 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col4a1P02463 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col4a1P02463 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Col4a1P02463 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col4a1P02463 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col4a1P02463 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC15.07■□□□□ 0
Col4a1P02463 Gm37437-201ENSMUST00000194451 1937 ntBASIC15.07■□□□□ 0
Col4a1P02463 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Col4a1P02463 AC091458.1-201ENSMUST00000220902 1361 ntBASIC15.07■□□□□ 0
Col4a1P02463 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col4a1P02463 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC15.07■□□□□ 0
Col4a1P02463 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col4a1P02463 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Col4a1P02463 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Col4a1P02463 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Col4a1P02463 Gm44758-201ENSMUST00000206096 2068 ntBASIC15.07■□□□□ 0
Col4a1P02463 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Col4a1P02463 Gm7002-201ENSMUST00000221386 2165 ntBASIC15.06■□□□□ 0
Col4a1P02463 Gm24891-201ENSMUST00000104391 136 ntBASIC15.06■□□□□ 0
Col4a1P02463 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col4a1P02463 Gm11663-201ENSMUST00000117888 290 ntBASIC15.06■□□□□ 0
Col4a1P02463 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col4a1P02463 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC15.06■□□□□ 0
Col4a1P02463 Gm23771-201ENSMUST00000178702 110 ntBASIC15.06■□□□□ 0
Col4a1P02463 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC15.06■□□□□ 0
Col4a1P02463 Gm38151-201ENSMUST00000195085 289 ntBASIC15.06■□□□□ 0
Col4a1P02463 Gm45550-201ENSMUST00000209380 946 ntBASIC15.06■□□□□ 0
Col4a1P02463 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC15.06■□□□□ 0
Col4a1P02463 AC098716.1-201ENSMUST00000213527 703 ntBASIC15.06■□□□□ 0
Col4a1P02463 AC159103.1-201ENSMUST00000228325 429 ntBASIC15.06■□□□□ 0
Col4a1P02463 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
Col4a1P02463 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col4a1P02463 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC15.06■□□□□ 0
Col4a1P02463 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
Col4a1P02463 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col4a1P02463 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col4a1P02463 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col4a1P02463 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
Col4a1P02463 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col4a1P02463 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC15.06■□□□□ 0
Col4a1P02463 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Col4a1P02463 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col4a1P02463 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col4a1P02463 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Col4a1P02463 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col4a1P02463 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Col4a1P02463 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
Col4a1P02463 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Col4a1P02463 Gm11949-201ENSMUST00000117640 372 ntBASIC15.06■□□□□ 0
Col4a1P02463 Gm24844-201ENSMUST00000158679 127 ntBASIC15.06■□□□□ 0
Col4a1P02463 Hsh2d-202ENSMUST00000165324 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col4a1P02463 Gm37299-201ENSMUST00000193951 826 ntBASIC15.06■□□□□ 0
Col4a1P02463 Gm34023-201ENSMUST00000195539 217 ntBASIC15.06■□□□□ 0
Col4a1P02463 Gm43830-201ENSMUST00000198760 1067 ntBASIC15.06■□□□□ 0
Col4a1P02463 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Col4a1P02463 CT485607.1-201ENSMUST00000216100 85 ntBASIC15.06■□□□□ 0
Col4a1P02463 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC15.05■□□□□ 0
Col4a1P02463 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC15.05■□□□□ 0
Col4a1P02463 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC15.05■□□□□ 0
Col4a1P02463 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Col4a1P02463 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC15.05■□□□□ 0
Col4a1P02463 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ 0
Col4a1P02463 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC15.05■□□□□ -0
Col4a1P02463 Gm43447-201ENSMUST00000198471 1535 ntBASIC15.05■□□□□ -0
Col4a1P02463 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Col4a1P02463 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC15.05■□□□□ -0
Col4a1P02463 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC15.05■□□□□ -0
Col4a1P02463 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC15.05■□□□□ -0
Col4a1P02463 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Col4a1P02463 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Col4a1P02463 Gm15352-201ENSMUST00000118696 270 ntBASIC15.05■□□□□ -0
Col4a1P02463 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC15.05■□□□□ -0
Col4a1P02463 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC15.05■□□□□ -0
Col4a1P02463 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC15.05■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms