Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC10.35□□□□□ -0.75
Hmgb3O54879 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC10.35□□□□□ -0.75
Hmgb3O54879 Gm27525-201ENSMUST00000184465 107 ntBASIC10.35□□□□□ -0.75
Hmgb3O54879 Gm44344-201ENSMUST00000200287 129 ntBASIC10.35□□□□□ -0.75
Hmgb3O54879 Gm7390-201ENSMUST00000212452 1216 ntBASIC10.35□□□□□ -0.75
Hmgb3O54879 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Gm24447-201ENSMUST00000083977 338 ntBASIC10.35□□□□□ -0.75
Hmgb3O54879 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
Hmgb3O54879 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Slc6a5-203ENSMUST00000207753 6966 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Gm5441-201ENSMUST00000186454 5181 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC10.35□□□□□ -0.75
Hmgb3O54879 Epb41l1-201ENSMUST00000029155 6220 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
Hmgb3O54879 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Fosb-201ENSMUST00000003640 3782 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Adarb1-204ENSMUST00000105406 6662 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Hmgb3O54879 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 AC122860.2-201ENSMUST00000217967 2671 ntBASIC10.34□□□□□ -0.75
Hmgb3O54879 Scml2-201ENSMUST00000019101 4842 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Col5a2-201ENSMUST00000086430 6625 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.75
Hmgb3O54879 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Pcdh15-207ENSMUST00000124046 5336 ntTSL 5 BASIC10.34□□□□□ -0.75
Hmgb3O54879 Hcfc1-201ENSMUST00000033761 8138 ntAPPRIS P2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Palld-202ENSMUST00000121200 4193 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC10.34□□□□□ -0.75
Hmgb3O54879 Plekha6-201ENSMUST00000038295 7388 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Mir449b-201ENSMUST00000104833 80 ntBASIC10.34□□□□□ -0.75
Hmgb3O54879 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC10.34□□□□□ -0.75
Hmgb3O54879 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Gm8000-201ENSMUST00000188378 592 ntBASIC10.34□□□□□ -0.75
Hmgb3O54879 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 AC138604.1-201ENSMUST00000226969 739 ntBASIC10.34□□□□□ -0.75
Hmgb3O54879 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Gm5161-201ENSMUST00000075243 853 ntBASIC10.34□□□□□ -0.75
Hmgb3O54879 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC10.34□□□□□ -0.75
Hmgb3O54879 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Slc9a1-201ENSMUST00000030669 4676 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Trappc11-201ENSMUST00000039061 4332 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC10.34□□□□□ -0.75
Hmgb3O54879 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Pak7-201ENSMUST00000035264 4848 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
Hmgb3O54879 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Cdh23-203ENSMUST00000105462 10592 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.75
Hmgb3O54879 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Gm26794-201ENSMUST00000180810 4312 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Hmgb3O54879 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
Hmgb3O54879 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC10.33□□□□□ -0.76
Hmgb3O54879 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC10.33□□□□□ -0.76
Hmgb3O54879 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC10.33□□□□□ -0.76
Hmgb3O54879 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
Hmgb3O54879 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Pml-211ENSMUST00000153820 2652 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
Hmgb3O54879 Fyco1-202ENSMUST00000167595 7692 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
Retrieved 100 of 76,532 protein–RNA pairs in 67.1 ms