Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm38151-201ENSMUST00000195085 289 ntBASIC14.61□□□□□ -0.07
Scn11aQ9R053 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC14.61□□□□□ -0.07
Scn11aQ9R053 Gm31401-201ENSMUST00000207352 734 ntTSL 3 BASIC14.61□□□□□ -0.07
Scn11aQ9R053 Ginm1-202ENSMUST00000065124 300 ntBASIC14.61□□□□□ -0.07
Scn11aQ9R053 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Scn11aQ9R053 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Scn11aQ9R053 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC14.61□□□□□ -0.07
Scn11aQ9R053 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Scn11aQ9R053 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Scn11aQ9R053 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC14.61□□□□□ -0.07
Scn11aQ9R053 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Scn11aQ9R053 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Scn11aQ9R053 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Scn11aQ9R053 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Scn11aQ9R053 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Scn11aQ9R053 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC14.61□□□□□ -0.07
Scn11aQ9R053 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC14.6□□□□□ -0.07
Scn11aQ9R053 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Gm23912-201ENSMUST00000104687 87 ntBASIC14.6□□□□□ -0.07
Scn11aQ9R053 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Gm11892-201ENSMUST00000117711 1202 ntBASIC14.6□□□□□ -0.07
Scn11aQ9R053 Gm13809-201ENSMUST00000117921 597 ntBASIC14.6□□□□□ -0.07
Scn11aQ9R053 Gm14724-201ENSMUST00000118400 537 ntBASIC14.6□□□□□ -0.07
Scn11aQ9R053 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Gm20714-202ENSMUST00000176436 748 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Gm10774-201ENSMUST00000188689 204 ntBASIC14.6□□□□□ -0.07
Scn11aQ9R053 Gm7902-201ENSMUST00000198842 947 ntBASIC14.6□□□□□ -0.07
Scn11aQ9R053 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Gm45338-204ENSMUST00000210658 1105 ntTSL 5 BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Gm4797-201ENSMUST00000219075 1283 ntBASIC14.6□□□□□ -0.07
Scn11aQ9R053 AC121960.1-201ENSMUST00000227982 564 ntBASIC14.6□□□□□ -0.07
Scn11aQ9R053 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Gm43807-201ENSMUST00000200678 1781 ntBASIC14.6□□□□□ -0.07
Scn11aQ9R053 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Gm22138-201ENSMUST00000158748 128 ntBASIC14.6□□□□□ -0.07
Scn11aQ9R053 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC14.6□□□□□ -0.07
Scn11aQ9R053 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC14.6□□□□□ -0.07
Scn11aQ9R053 AC112945.1-201ENSMUST00000226413 514 ntBASIC14.6□□□□□ -0.07
Scn11aQ9R053 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Scn11aQ9R053 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Gm6189-201ENSMUST00000164487 2082 ntBASIC14.59□□□□□ -0.07
Scn11aQ9R053 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Gm3765-201ENSMUST00000130985 1447 ntBASIC14.59□□□□□ -0.07
Scn11aQ9R053 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Gm11801-201ENSMUST00000117807 746 ntBASIC14.59□□□□□ -0.07
Scn11aQ9R053 Gm12899-201ENSMUST00000120565 551 ntBASIC14.59□□□□□ -0.07
Scn11aQ9R053 Gm16323-201ENSMUST00000134920 556 ntTSL 3 BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Gm4310-201ENSMUST00000177847 889 ntBASIC14.59□□□□□ -0.07
Scn11aQ9R053 Gm8100-201ENSMUST00000182906 988 ntBASIC14.59□□□□□ -0.07
Scn11aQ9R053 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC14.59□□□□□ -0.07
Scn11aQ9R053 AC156501.1-201ENSMUST00000228219 270 ntBASIC14.59□□□□□ -0.07
Scn11aQ9R053 Gm26448-201ENSMUST00000082446 203 ntBASIC14.59□□□□□ -0.07
Scn11aQ9R053 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
Scn11aQ9R053 Gm43447-201ENSMUST00000198471 1535 ntBASIC14.59□□□□□ -0.07
Scn11aQ9R053 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC14.59□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 52.1 ms