Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Slc25a36-202ENSMUST00000085206 5227 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdc40Q9DC48 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Gpr179-201ENSMUST00000093942 9219 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 AC117194.1-201ENSMUST00000224847 3002 ntBASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Gm4986-201ENSMUST00000119731 549 ntBASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Gm13813-201ENSMUST00000120998 787 ntBASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Gm14381-201ENSMUST00000122105 414 ntBASIC11.67□□□□□ -0.54
Cdc40Q9DC48 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Gm26083-201ENSMUST00000157904 193 ntBASIC11.67□□□□□ -0.54
Cdc40Q9DC48 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Gm3890-201ENSMUST00000182416 207 ntBASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Gm38241-201ENSMUST00000192641 898 ntBASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Gm7118-201ENSMUST00000200167 1003 ntBASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Gm43416-201ENSMUST00000201916 1015 ntBASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Gm3756-201ENSMUST00000169182 1355 ntBASIC11.67□□□□□ -0.54
Cdc40Q9DC48 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Gm3052-202ENSMUST00000188254 2224 ntBASIC11.66□□□□□ -0.54
Cdc40Q9DC48 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Gm14921-201ENSMUST00000118643 908 ntBASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Mospd4-201ENSMUST00000180618 576 ntBASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Gm27320-201ENSMUST00000184892 109 ntBASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Gm37042-201ENSMUST00000193816 581 ntBASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Gm8099-201ENSMUST00000200510 742 ntBASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Gm18584-201ENSMUST00000203098 964 ntBASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Gm43045-201ENSMUST00000198725 2095 ntBASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Cdc40Q9DC48 Gm44241-201ENSMUST00000203230 1662 ntBASIC11.65□□□□□ -0.54
Cdc40Q9DC48 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms