Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Vps28Q9D1C8 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Gm10728-201ENSMUST00000194292 1829 ntBASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Gm8176-201ENSMUST00000191297 1099 ntBASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Gm38319-201ENSMUST00000194537 1266 ntBASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Gm38341-201ENSMUST00000195357 515 ntBASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Gm43758-201ENSMUST00000199500 367 ntBASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Gm7783-201ENSMUST00000204795 781 ntBASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Gm19963-201ENSMUST00000208413 1255 ntBASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Vps28Q9D1C8 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Zfp125-201ENSMUST00000079237 2488 ntBASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Gm13350-201ENSMUST00000120519 479 ntBASIC12.85□□□□□ -0.35
Vps28Q9D1C8 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Gm7584-201ENSMUST00000175829 940 ntBASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Gm2546-201ENSMUST00000182630 991 ntBASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Gm7895-201ENSMUST00000187459 1173 ntBASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Gm43823-201ENSMUST00000197391 1808 ntBASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
Vps28Q9D1C8 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Vps28Q9D1C8 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms