Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp49Q6P9L4 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Usp49Q6P9L4 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp49Q6P9L4 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp49Q6P9L4 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp49Q6P9L4 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp49Q6P9L4 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp49Q6P9L4 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Usp49Q6P9L4 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp49Q6P9L4 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Usp49Q6P9L4 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp49Q6P9L4 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Usp49Q6P9L4 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp49Q6P9L4 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp49Q6P9L4 Gm37269-201ENSMUST00000193906 1891 ntBASIC14.02□□□□□ -0.16
Usp49Q6P9L4 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp49Q6P9L4 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp49Q6P9L4 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp49Q6P9L4 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
Usp49Q6P9L4 Gm5884-201ENSMUST00000036712 1479 ntBASIC14.02□□□□□ -0.16
Usp49Q6P9L4 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC14.02□□□□□ -0.17
Usp49Q6P9L4 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Usp49Q6P9L4 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Usp49Q6P9L4 Gm5187-201ENSMUST00000117317 991 ntBASIC14.02□□□□□ -0.17
Usp49Q6P9L4 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Usp49Q6P9L4 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC14.02□□□□□ -0.17
Usp49Q6P9L4 Gm38158-201ENSMUST00000194617 339 ntBASIC14.02□□□□□ -0.17
Usp49Q6P9L4 Gm37008-201ENSMUST00000195712 319 ntBASIC14.02□□□□□ -0.17
Usp49Q6P9L4 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC14.02□□□□□ -0.17
Usp49Q6P9L4 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp49Q6P9L4 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp49Q6P9L4 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Usp49Q6P9L4 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp49Q6P9L4 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp49Q6P9L4 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC14.02□□□□□ -0.17
Usp49Q6P9L4 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp49Q6P9L4 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp49Q6P9L4 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp49Q6P9L4 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Usp49Q6P9L4 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp49Q6P9L4 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp49Q6P9L4 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp49Q6P9L4 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Gm4735-201ENSMUST00000138679 1302 ntBASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Gm5855-201ENSMUST00000200240 1305 ntBASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Gm24548-201ENSMUST00000158650 108 ntBASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Gm44405-201ENSMUST00000198952 126 ntBASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 CT025624.1-201ENSMUST00000224007 2700 ntBASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Usp49Q6P9L4 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC14□□□□□ -0.17
Usp49Q6P9L4 AC156031.2-201ENSMUST00000213107 3310 ntBASIC14□□□□□ -0.17
Usp49Q6P9L4 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Usp49Q6P9L4 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Usp49Q6P9L4 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC14□□□□□ -0.17
Usp49Q6P9L4 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Usp49Q6P9L4 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC14□□□□□ -0.17
Usp49Q6P9L4 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Usp49Q6P9L4 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Usp49Q6P9L4 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Usp49Q6P9L4 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Usp49Q6P9L4 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
Usp49Q6P9L4 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Usp49Q6P9L4 Gm13875-201ENSMUST00000120162 282 ntBASIC14□□□□□ -0.17
Usp49Q6P9L4 Gm16379-201ENSMUST00000161469 348 ntBASIC14□□□□□ -0.17
Usp49Q6P9L4 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Usp49Q6P9L4 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Usp49Q6P9L4 Gm18304-201ENSMUST00000189162 546 ntBASIC14□□□□□ -0.17
Usp49Q6P9L4 Gm8762-201ENSMUST00000193486 339 ntBASIC14□□□□□ -0.17
Usp49Q6P9L4 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC14□□□□□ -0.17
Usp49Q6P9L4 Gm39404-201ENSMUST00000216350 313 ntBASIC14□□□□□ -0.17
Usp49Q6P9L4 Gm5781-201ENSMUST00000219792 443 ntBASIC14□□□□□ -0.17
Usp49Q6P9L4 AC125209.1-201ENSMUST00000225812 766 ntBASIC14□□□□□ -0.17
Usp49Q6P9L4 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Usp49Q6P9L4 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 60.7 ms