Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
Vps54Q5SPW0 Gm15547-201ENSMUST00000122152 333 ntBASIC15.03■□□□□ -0
Vps54Q5SPW0 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC15.03■□□□□ -0
Vps54Q5SPW0 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC15.03■□□□□ -0
Vps54Q5SPW0 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC15.03■□□□□ -0
Vps54Q5SPW0 Gm26083-201ENSMUST00000157904 193 ntBASIC15.03■□□□□ -0
Vps54Q5SPW0 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Vps54Q5SPW0 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Vps54Q5SPW0 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
Vps54Q5SPW0 Gm9257-201ENSMUST00000221254 232 ntBASIC15.03■□□□□ -0
Vps54Q5SPW0 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Vps54Q5SPW0 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Vps54Q5SPW0 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Vps54Q5SPW0 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Vps54Q5SPW0 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Vps54Q5SPW0 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Vps54Q5SPW0 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Vps54Q5SPW0 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Vps54Q5SPW0 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Vps54Q5SPW0 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC15.03■□□□□ -0
Vps54Q5SPW0 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC15.03■□□□□ -0
Vps54Q5SPW0 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC15.03■□□□□ -0
Vps54Q5SPW0 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Vps54Q5SPW0 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Vps54Q5SPW0 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Vps54Q5SPW0 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Vps54Q5SPW0 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC15.02■□□□□ -0
Vps54Q5SPW0 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC15.02■□□□□ -0
Vps54Q5SPW0 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Vps54Q5SPW0 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Vps54Q5SPW0 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Vps54Q5SPW0 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Vps54Q5SPW0 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Vps54Q5SPW0 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC15.02■□□□□ -0
Vps54Q5SPW0 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
Vps54Q5SPW0 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Vps54Q5SPW0 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Vps54Q5SPW0 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC15.02■□□□□ -0
Vps54Q5SPW0 Gm11930-201ENSMUST00000117788 190 ntBASIC15.02■□□□□ -0
Vps54Q5SPW0 Gm9083-201ENSMUST00000120423 819 ntBASIC15.02■□□□□ -0
Vps54Q5SPW0 Gm12749-201ENSMUST00000122138 1159 ntBASIC15.02■□□□□ -0
Vps54Q5SPW0 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC15.02■□□□□ -0
Vps54Q5SPW0 Gm23119-201ENSMUST00000158610 140 ntBASIC15.02■□□□□ -0
Vps54Q5SPW0 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC15.02■□□□□ -0
Vps54Q5SPW0 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC15.02■□□□□ -0
Vps54Q5SPW0 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Vps54Q5SPW0 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC15.02■□□□□ -0
Vps54Q5SPW0 Gm18615-201ENSMUST00000222919 1031 ntBASIC15.02■□□□□ -0
Vps54Q5SPW0 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Vps54Q5SPW0 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Vps54Q5SPW0 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Vps54Q5SPW0 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Vps54Q5SPW0 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Vps54Q5SPW0 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Vps54Q5SPW0 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
Vps54Q5SPW0 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Vps54Q5SPW0 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Vps54Q5SPW0 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Vps54Q5SPW0 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Vps54Q5SPW0 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Vps54Q5SPW0 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Gm8885-201ENSMUST00000189382 598 ntBASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Vps54Q5SPW0 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps54Q5SPW0 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps54Q5SPW0 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC15□□□□□ -0.01
Vps54Q5SPW0 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps54Q5SPW0 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Vps54Q5SPW0 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC15□□□□□ -0.01
Vps54Q5SPW0 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps54Q5SPW0 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Vps54Q5SPW0 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Vps54Q5SPW0 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC15□□□□□ -0.01
Vps54Q5SPW0 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Vps54Q5SPW0 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC15□□□□□ -0.01
Vps54Q5SPW0 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC15□□□□□ -0.01
Vps54Q5SPW0 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC15□□□□□ -0.01
Vps54Q5SPW0 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC15□□□□□ -0.01
Vps54Q5SPW0 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Vps54Q5SPW0 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 50.2 ms