Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 1700017J07Rik-201ENSMUST00000140241 473 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col17a1Q07563 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col17a1Q07563 Gm27003-201ENSMUST00000182590 497 ntTSL 5 BASIC18.82■□□□□ 0.6
Col17a1Q07563 Plac9a-203ENSMUST00000183725 439 ntTSL 3 BASIC18.82■□□□□ 0.6
Col17a1Q07563 Plac9b-202ENSMUST00000183811 396 ntTSL 3 BASIC18.82■□□□□ 0.6
Col17a1Q07563 Gm38233-201ENSMUST00000194259 807 ntBASIC18.82■□□□□ 0.6
Col17a1Q07563 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Col17a1Q07563 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Col17a1Q07563 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col17a1Q07563 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col17a1Q07563 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Col17a1Q07563 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Col17a1Q07563 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col17a1Q07563 Smok4a-201ENSMUST00000074512 1455 ntBASIC18.81■□□□□ 0.6
Col17a1Q07563 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col17a1Q07563 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC18.81■□□□□ 0.6
Col17a1Q07563 AC167013.2-201ENSMUST00000228520 2684 ntBASIC18.81■□□□□ 0.6
Col17a1Q07563 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col17a1Q07563 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Col17a1Q07563 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col17a1Q07563 Gm10842-201ENSMUST00000100338 369 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Col17a1Q07563 Pemt-202ENSMUST00000102692 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col17a1Q07563 Clcc1-202ENSMUST00000106609 2043 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col17a1Q07563 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Col17a1Q07563 Gm11244-201ENSMUST00000121243 237 ntBASIC18.81■□□□□ 0.6
Col17a1Q07563 Gm11736-201ENSMUST00000121468 505 ntBASIC18.81■□□□□ 0.6
Col17a1Q07563 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col17a1Q07563 Gm29593-201ENSMUST00000189827 620 ntTSL 5 BASIC18.81■□□□□ 0.6
Col17a1Q07563 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC18.81■□□□□ 0.6
Col17a1Q07563 Prmt1-214ENSMUST00000209124 741 ntTSL 5 BASIC18.81■□□□□ 0.6
Col17a1Q07563 Gm18035-201ENSMUST00000211962 589 ntBASIC18.81■□□□□ 0.6
Col17a1Q07563 AC113060.1-201ENSMUST00000225689 1573 ntBASIC18.81■□□□□ 0.6
Col17a1Q07563 Olfr669-201ENSMUST00000098164 954 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Col17a1Q07563 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col17a1Q07563 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC18.81■□□□□ 0.6
Col17a1Q07563 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col17a1Q07563 Kcne3-202ENSMUST00000170954 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col17a1Q07563 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col17a1Q07563 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col17a1Q07563 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col17a1Q07563 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col17a1Q07563 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col17a1Q07563 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC18.8■□□□□ 0.6
Col17a1Q07563 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Zc2hc1a-203ENSMUST00000193010 1420 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 B2m-201ENSMUST00000102476 860 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 2210406O10Rik-203ENSMUST00000149687 1198 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Gm17226-201ENSMUST00000166637 780 ntTSL 3 BASIC18.8■□□□□ 0.6
Col17a1Q07563 Tex29-204ENSMUST00000166638 561 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
Col17a1Q07563 Gm6548-201ENSMUST00000167498 1165 ntBASIC18.8■□□□□ 0.6
Col17a1Q07563 Gm38135-201ENSMUST00000195068 502 ntBASIC18.8■□□□□ 0.6
Col17a1Q07563 A830092H15Rik-202ENSMUST00000195446 649 ntTSL 3 BASIC18.8■□□□□ 0.6
Col17a1Q07563 Gm42375-201ENSMUST00000206226 745 ntTSL 5 BASIC18.8■□□□□ 0.6
Col17a1Q07563 CT010506.1-201ENSMUST00000223673 349 ntBASIC18.8■□□□□ 0.6
Col17a1Q07563 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Ccdc30-203ENSMUST00000084307 989 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Col17a1Q07563 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Gm8968-201ENSMUST00000199133 1303 ntBASIC18.8■□□□□ 0.6
Col17a1Q07563 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col17a1Q07563 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col17a1Q07563 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col17a1Q07563 Gm11544-201ENSMUST00000120215 382 ntBASIC18.79■□□□□ 0.6
Col17a1Q07563 Gm12009-201ENSMUST00000121361 1100 ntBASIC18.79■□□□□ 0.6
Col17a1Q07563 Rplp0-ps1-201ENSMUST00000122125 933 ntBASIC18.79■□□□□ 0.6
Col17a1Q07563 Gm11365-201ENSMUST00000144277 774 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col17a1Q07563 Gm26976-201ENSMUST00000182929 908 ntBASIC18.79■□□□□ 0.6
Col17a1Q07563 Calm5-202ENSMUST00000184271 423 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col17a1Q07563 Ywhaq-ps1-201ENSMUST00000206623 710 ntBASIC18.79■□□□□ 0.6
Col17a1Q07563 AC107752.1-201ENSMUST00000219362 469 ntBASIC18.79■□□□□ 0.6
Col17a1Q07563 AC159261.1-201ENSMUST00000222493 911 ntTSL 2 BASIC18.79■□□□□ 0.6
Col17a1Q07563 AC154213.1-201ENSMUST00000228234 583 ntBASIC18.79■□□□□ 0.6
Col17a1Q07563 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col17a1Q07563 Gm37014-201ENSMUST00000194723 2253 ntBASIC18.79■□□□□ 0.6
Col17a1Q07563 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col17a1Q07563 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Col17a1Q07563 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col17a1Q07563 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col17a1Q07563 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Col17a1Q07563 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col17a1Q07563 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col17a1Q07563 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC18.79■□□□□ 0.6
Col17a1Q07563 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col17a1Q07563 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
Col17a1Q07563 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
Col17a1Q07563 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 51.8 ms