Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Nkx3-1P97436 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC10.85□□□□□ -0.67
Nkx3-1P97436 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Gm25732-201ENSMUST00000175168 60 ntBASIC10.85□□□□□ -0.67
Nkx3-1P97436 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Gm34767-201ENSMUST00000191813 1062 ntBASIC10.85□□□□□ -0.67
Nkx3-1P97436 Gm45433-201ENSMUST00000209386 247 ntBASIC10.85□□□□□ -0.67
Nkx3-1P97436 CT025694.1-201ENSMUST00000226188 934 ntBASIC10.85□□□□□ -0.67
Nkx3-1P97436 Gm10076-201ENSMUST00000073238 384 ntBASIC10.85□□□□□ -0.67
Nkx3-1P97436 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Gm10305-201ENSMUST00000195331 2475 ntBASIC10.85□□□□□ -0.67
Nkx3-1P97436 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC10.85□□□□□ -0.67
Nkx3-1P97436 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Gm37844-201ENSMUST00000192473 4097 ntBASIC10.85□□□□□ -0.67
Nkx3-1P97436 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Nkx3-1P97436 Gm7002-201ENSMUST00000221386 2165 ntBASIC10.84□□□□□ -0.67
Nkx3-1P97436 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Gm23200-201ENSMUST00000104379 132 ntBASIC10.84□□□□□ -0.67
Nkx3-1P97436 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Gm13315-201ENSMUST00000120376 991 ntBASIC10.84□□□□□ -0.67
Nkx3-1P97436 Gm9083-201ENSMUST00000120423 819 ntBASIC10.84□□□□□ -0.67
Nkx3-1P97436 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC10.84□□□□□ -0.67
Nkx3-1P97436 Gm5863-201ENSMUST00000121760 1008 ntBASIC10.84□□□□□ -0.67
Nkx3-1P97436 Gm6963-201ENSMUST00000147879 379 ntBASIC10.84□□□□□ -0.67
Nkx3-1P97436 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Nkx3-1P97436 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC10.83□□□□□ -0.67
Nkx3-1P97436 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.67
Nkx3-1P97436 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.67
Nkx3-1P97436 Gm5939-201ENSMUST00000119613 2874 ntBASIC10.83□□□□□ -0.68
Nkx3-1P97436 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Nkx3-1P97436 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 51.8 ms