Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col18a1P39061 Uqcrc2-201ENSMUST00000033176 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col18a1P39061 Gm37736-201ENSMUST00000193564 2802 ntBASIC16.18■□□□□ 0.18
Col18a1P39061 Lonp2-207ENSMUST00000163987 1556 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col18a1P39061 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col18a1P39061 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Col18a1P39061 Xlr4c-204ENSMUST00000114531 1104 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Col18a1P39061 Ntm-202ENSMUST00000115236 1072 ntTSL 5 BASIC16.18■□□□□ 0.18
Col18a1P39061 Apoc3-202ENSMUST00000118649 453 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Col18a1P39061 D3Ertd751e-204ENSMUST00000119572 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col18a1P39061 Gm6423-201ENSMUST00000204315 934 ntBASIC16.18■□□□□ 0.18
Col18a1P39061 Akr1c18-201ENSMUST00000021635 1200 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col18a1P39061 CT573047.1-201ENSMUST00000223652 851 ntBASIC16.18■□□□□ 0.18
Col18a1P39061 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col18a1P39061 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col18a1P39061 AC093022.4-203ENSMUST00000228523 2657 ntBASIC16.17■□□□□ 0.18
Col18a1P39061 Schip1-202ENSMUST00000169909 1517 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col18a1P39061 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col18a1P39061 E330034L11Rik-201ENSMUST00000200640 1742 ntBASIC16.17■□□□□ 0.18
Col18a1P39061 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col18a1P39061 Creb3l4-201ENSMUST00000029547 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col18a1P39061 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col18a1P39061 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col18a1P39061 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col18a1P39061 Gm12194-201ENSMUST00000117756 1012 ntBASIC16.17■□□□□ 0.18
Col18a1P39061 Gm14993-201ENSMUST00000121180 164 ntBASIC16.17■□□□□ 0.18
Col18a1P39061 Gm24328-201ENSMUST00000175104 67 ntBASIC16.17■□□□□ 0.18
Col18a1P39061 Gm11942-201ENSMUST00000180255 345 ntBASIC16.17■□□□□ 0.18
Col18a1P39061 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC16.17■□□□□ 0.18
Col18a1P39061 C230057A21Rik-202ENSMUST00000195781 600 ntTSL 3 BASIC16.17■□□□□ 0.18
Col18a1P39061 Gm42655-201ENSMUST00000202782 1134 ntBASIC16.17■□□□□ 0.18
Col18a1P39061 Gm43969-201ENSMUST00000204833 535 ntBASIC16.17■□□□□ 0.18
Col18a1P39061 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col18a1P39061 Clcc1-202ENSMUST00000106609 2043 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col18a1P39061 4930558J22Rik-201ENSMUST00000139822 1480 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col18a1P39061 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col18a1P39061 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Col18a1P39061 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Col18a1P39061 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC16.17■□□□□ 0.18
Col18a1P39061 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col18a1P39061 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col18a1P39061 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col18a1P39061 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col18a1P39061 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
Col18a1P39061 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col18a1P39061 Gm23612-201ENSMUST00000103823 110 ntBASIC16.16■□□□□ 0.18
Col18a1P39061 S100a3-201ENSMUST00000001047 712 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col18a1P39061 Mrpl24-204ENSMUST00000121920 1115 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col18a1P39061 Slfn5os-201ENSMUST00000127074 574 ntTSL 2 BASIC16.16■□□□□ 0.18
Col18a1P39061 Gm11651-201ENSMUST00000130673 529 ntTSL 3 BASIC16.16■□□□□ 0.18
Col18a1P39061 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col18a1P39061 Gm23576-201ENSMUST00000179918 110 ntBASIC16.16■□□□□ 0.18
Col18a1P39061 Gm7985-201ENSMUST00000183329 981 ntBASIC16.16■□□□□ 0.18
Col18a1P39061 Calm5-202ENSMUST00000184271 423 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col18a1P39061 Gm17825-201ENSMUST00000206836 794 ntBASIC16.16■□□□□ 0.18
Col18a1P39061 Gm44913-201ENSMUST00000208060 2990 ntBASIC16.16■□□□□ 0.18
Col18a1P39061 Gm4978-201ENSMUST00000071565 801 ntBASIC16.16■□□□□ 0.18
Col18a1P39061 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col18a1P39061 4921524J17Rik-201ENSMUST00000047749 1587 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col18a1P39061 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col18a1P39061 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col18a1P39061 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col18a1P39061 Gm12159-201ENSMUST00000143869 1447 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col18a1P39061 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col18a1P39061 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col18a1P39061 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC16.16■□□□□ 0.18
Col18a1P39061 Oprl1-204ENSMUST00000108767 1248 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col18a1P39061 Fmr1nb-203ENSMUST00000114647 679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col18a1P39061 Gm14266-202ENSMUST00000146542 1067 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col18a1P39061 Gm26555-201ENSMUST00000180452 1037 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col18a1P39061 Gm26976-201ENSMUST00000182929 908 ntBASIC16.15■□□□□ 0.18
Col18a1P39061 Gm4034-201ENSMUST00000187674 480 ntBASIC16.15■□□□□ 0.18
Col18a1P39061 Selenos-204ENSMUST00000206044 911 ntTSL 3 BASIC16.15■□□□□ 0.18
Col18a1P39061 Gm45527-201ENSMUST00000211052 774 ntBASIC16.15■□□□□ 0.18
Col18a1P39061 Gm31513-201ENSMUST00000223261 684 ntTSL 2 BASIC16.15■□□□□ 0.18
Col18a1P39061 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col18a1P39061 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC16.15■□□□□ 0.18
Col18a1P39061 Oma1-201ENSMUST00000035780 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col18a1P39061 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col18a1P39061 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col18a1P39061 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col18a1P39061 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Col18a1P39061 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col18a1P39061 Gm18210-201ENSMUST00000209001 1524 ntBASIC16.15■□□□□ 0.18
Col18a1P39061 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col18a1P39061 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC16.15■□□□□ 0.18
Col18a1P39061 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
Col18a1P39061 Gm25226-201ENSMUST00000158198 123 ntBASIC16.15■□□□□ 0.18
Col18a1P39061 Dydc1-202ENSMUST00000161837 829 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Col18a1P39061 Gm6644-201ENSMUST00000186507 951 ntBASIC16.15■□□□□ 0.18
Col18a1P39061 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC16.15■□□□□ 0.18
Col18a1P39061 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col18a1P39061 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC16.15■□□□□ 0.18
Col18a1P39061 AC164437.3-201ENSMUST00000228323 347 ntBASIC16.15■□□□□ 0.18
Col18a1P39061 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col18a1P39061 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Col18a1P39061 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
Col18a1P39061 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC16.14■□□□□ 0.18
Col18a1P39061 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col18a1P39061 Triml2-201ENSMUST00000163869 1467 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms