Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC10.17□□□□□ -0.78
Cdx1P18111 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC10.17□□□□□ -0.78
Cdx1P18111 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Pip5k1a-206ENSMUST00000107236 3618 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Hyal1-202ENSMUST00000112387 2706 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC10.17□□□□□ -0.78
Cdx1P18111 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC10.17□□□□□ -0.78
Cdx1P18111 Asb8-204ENSMUST00000143400 2226 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC10.17□□□□□ -0.78
Cdx1P18111 Tnc-202ENSMUST00000107371 2928 ntTSL 5 BASIC10.17□□□□□ -0.78
Cdx1P18111 Sp2-202ENSMUST00000107623 2907 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
Cdx1P18111 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx1P18111 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC10.16□□□□□ -0.78
Cdx1P18111 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC10.16□□□□□ -0.78
Cdx1P18111 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
Cdx1P18111 Zkscan3-207ENSMUST00000223831 2101 ntBASIC10.16□□□□□ -0.78
Cdx1P18111 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Sp6-201ENSMUST00000047997 3546 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Epb41l3-202ENSMUST00000112680 4073 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
Cdx1P18111 Kif2c-202ENSMUST00000106436 2378 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
Cdx1P18111 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC10.16□□□□□ -0.78
Cdx1P18111 Ints6l-207ENSMUST00000186445 3608 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.78
Cdx1P18111 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
Cdx1P18111 Acad9-201ENSMUST00000011492 3930 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC10.16□□□□□ -0.78
Cdx1P18111 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC10.16□□□□□ -0.78
Cdx1P18111 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Gm15957-201ENSMUST00000118893 974 ntBASIC10.16□□□□□ -0.78
Cdx1P18111 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC10.16□□□□□ -0.78
Cdx1P18111 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.78
Cdx1P18111 Gm17150-201ENSMUST00000165577 381 ntBASIC10.16□□□□□ -0.78
Cdx1P18111 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC10.16□□□□□ -0.78
Cdx1P18111 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC10.16□□□□□ -0.78
Cdx1P18111 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC10.16□□□□□ -0.78
Cdx1P18111 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC10.16□□□□□ -0.78
Cdx1P18111 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC10.16□□□□□ -0.78
Cdx1P18111 AC238811.3-201ENSMUST00000225422 709 ntBASIC10.16□□□□□ -0.78
Cdx1P18111 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC10.16□□□□□ -0.78
Cdx1P18111 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC10.16□□□□□ -0.78
Cdx1P18111 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 AC122291.1-201ENSMUST00000228937 5748 ntBASIC10.16□□□□□ -0.78
Cdx1P18111 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC10.16□□□□□ -0.78
Cdx1P18111 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC10.16□□□□□ -0.78
Cdx1P18111 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Tcf4-240ENSMUST00000201781 2779 ntTSL 5 BASIC10.16□□□□□ -0.78
Cdx1P18111 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx1P18111 Hgs-203ENSMUST00000106205 2898 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
Cdx1P18111 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC10.16□□□□□ -0.78
Cdx1P18111 Gm37580-201ENSMUST00000192408 2800 ntBASIC10.15□□□□□ -0.78
Cdx1P18111 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Tnfaip3-201ENSMUST00000019997 4422 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC10.15□□□□□ -0.78
Cdx1P18111 Steap3-201ENSMUST00000112639 2931 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC10.15□□□□□ -0.78
Cdx1P18111 Ccpg1-201ENSMUST00000037977 3151 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC10.15□□□□□ -0.78
Cdx1P18111 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx1P18111 Gm43064-201ENSMUST00000199710 3144 ntAPPRIS P1 TSL 2 BASIC10.15□□□□□ -0.78
Cdx1P18111 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC10.15□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 53.7 ms