Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC14.5□□□□□ -0.09
Col1a1P11087 Dmrtc1a-204ENSMUST00000121197 1067 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col1a1P11087 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC14.5□□□□□ -0.09
Col1a1P11087 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col1a1P11087 Gm44270-201ENSMUST00000203084 1234 ntBASIC14.5□□□□□ -0.09
Col1a1P11087 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC14.5□□□□□ -0.09
Col1a1P11087 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC14.5□□□□□ -0.09
Col1a1P11087 Gm45575-201ENSMUST00000210283 548 ntBASIC14.5□□□□□ -0.09
Col1a1P11087 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col1a1P11087 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC14.5□□□□□ -0.09
Col1a1P11087 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col1a1P11087 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
Col1a1P11087 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col1a1P11087 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Col1a1P11087 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC14.5□□□□□ -0.09
Col1a1P11087 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Col1a1P11087 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col1a1P11087 Gm45605-201ENSMUST00000210265 4269 ntBASIC14.5□□□□□ -0.09
Col1a1P11087 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC14.5□□□□□ -0.09
Col1a1P11087 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col1a1P11087 Gm42863-201ENSMUST00000197875 2958 ntBASIC14.5□□□□□ -0.09
Col1a1P11087 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Col1a1P11087 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC14.5□□□□□ -0.09
Col1a1P11087 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col1a1P11087 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Col1a1P11087 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Col1a1P11087 Gm11956-201ENSMUST00000119525 512 ntBASIC14.5□□□□□ -0.09
Col1a1P11087 Gm16071-201ENSMUST00000119589 793 ntBASIC14.5□□□□□ -0.09
Col1a1P11087 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC14.5□□□□□ -0.09
Col1a1P11087 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Col1a1P11087 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col1a1P11087 Gm27910-201ENSMUST00000185004 107 ntBASIC14.5□□□□□ -0.09
Col1a1P11087 2610027F03Rik-202ENSMUST00000186982 603 ntTSL 5 BASIC14.5□□□□□ -0.09
Col1a1P11087 Gm17826-201ENSMUST00000189720 798 ntBASIC14.5□□□□□ -0.09
Col1a1P11087 Ighv5-11-201ENSMUST00000193354 371 ntBASIC14.5□□□□□ -0.09
Col1a1P11087 Gm37299-201ENSMUST00000193951 826 ntBASIC14.5□□□□□ -0.09
Col1a1P11087 Nras-208ENSMUST00000200069 831 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
Col1a1P11087 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col1a1P11087 Snu13-202ENSMUST00000080622 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col1a1P11087 Mirlet7i-201ENSMUST00000083472 85 ntBASIC14.5□□□□□ -0.09
Col1a1P11087 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Col1a1P11087 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Col1a1P11087 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Col1a1P11087 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 AC151895.1-201ENSMUST00000219025 1742 ntBASIC14.49□□□□□ -0.09
Col1a1P11087 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Gm43045-201ENSMUST00000198725 2095 ntBASIC14.49□□□□□ -0.09
Col1a1P11087 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC14.49□□□□□ -0.09
Col1a1P11087 Rpl15-204ENSMUST00000112598 802 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Gm12164-201ENSMUST00000121695 551 ntBASIC14.49□□□□□ -0.09
Col1a1P11087 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Gm16323-201ENSMUST00000134920 556 ntTSL 3 BASIC14.49□□□□□ -0.09
Col1a1P11087 Gm18159-201ENSMUST00000174516 1070 ntBASIC14.49□□□□□ -0.09
Col1a1P11087 Gm29499-201ENSMUST00000189151 486 ntBASIC14.49□□□□□ -0.09
Col1a1P11087 Gm28329-201ENSMUST00000191208 689 ntBASIC14.49□□□□□ -0.09
Col1a1P11087 Gm29171-201ENSMUST00000191397 486 ntBASIC14.49□□□□□ -0.09
Col1a1P11087 Gm38228-201ENSMUST00000193169 1293 ntBASIC14.49□□□□□ -0.09
Col1a1P11087 Gm43186-201ENSMUST00000198130 824 ntBASIC14.49□□□□□ -0.09
Col1a1P11087 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Col1a1P11087 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
Col1a1P11087 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC14.49□□□□□ -0.09
Col1a1P11087 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Col1a1P11087 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Col1a1P11087 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col1a1P11087 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col1a1P11087 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Col1a1P11087 Sema6c-201ENSMUST00000090821 3933 ntAPPRIS P3 TSL 5 BASIC14.48□□□□□ -0.09
Col1a1P11087 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col1a1P11087 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col1a1P11087 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col1a1P11087 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col1a1P11087 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC14.48□□□□□ -0.09
Col1a1P11087 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col1a1P11087 Acot6-202ENSMUST00000222921 3622 ntBASIC14.48□□□□□ -0.09
Col1a1P11087 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col1a1P11087 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col1a1P11087 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col1a1P11087 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Col1a1P11087 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Col1a1P11087 Gm7114-201ENSMUST00000190159 1789 ntBASIC14.48□□□□□ -0.09
Col1a1P11087 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
Col1a1P11087 Ptges3l-203ENSMUST00000107252 853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 66.4 ms