Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Gm37844-201ENSMUST00000192473 4097 ntBASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Gm23270-201ENSMUST00000104055 131 ntBASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Gm27243-201ENSMUST00000183964 521 ntBASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Gm18304-201ENSMUST00000189162 546 ntBASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cpsf3Q9QXK7 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Gm14381-201ENSMUST00000122105 414 ntBASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Gm8494-201ENSMUST00000178171 1233 ntBASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Gm31256-201ENSMUST00000194705 506 ntBASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 AC169036.1-201ENSMUST00000227994 296 ntBASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Cpsf3Q9QXK7 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cpsf3Q9QXK7 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cpsf3Q9QXK7 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
Cpsf3Q9QXK7 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cpsf3Q9QXK7 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Cpsf3Q9QXK7 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cpsf3Q9QXK7 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cpsf3Q9QXK7 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cpsf3Q9QXK7 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Cpsf3Q9QXK7 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Cpsf3Q9QXK7 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cpsf3Q9QXK7 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Cpsf3Q9QXK7 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Cpsf3Q9QXK7 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cpsf3Q9QXK7 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Cpsf3Q9QXK7 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms