Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 CT010431.1-201ENSMUST00000221249 1080 ntBASIC11.83□□□□□ -0.52
Trim39Q9ESN2 CT030657.3-201ENSMUST00000222707 1200 ntBASIC11.83□□□□□ -0.52
Trim39Q9ESN2 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trim39Q9ESN2 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Trim39Q9ESN2 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trim39Q9ESN2 Arhgef15-203ENSMUST00000108671 4372 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Trim39Q9ESN2 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trim39Q9ESN2 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trim39Q9ESN2 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trim39Q9ESN2 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trim39Q9ESN2 AL645783.1-201ENSMUST00000221416 1832 ntBASIC11.83□□□□□ -0.52
Trim39Q9ESN2 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trim39Q9ESN2 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC11.83□□□□□ -0.52
Trim39Q9ESN2 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Trim39Q9ESN2 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trim39Q9ESN2 Slc36a1-203ENSMUST00000108872 5264 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Trim39Q9ESN2 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC11.83□□□□□ -0.52
Trim39Q9ESN2 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Trim39Q9ESN2 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Trim39Q9ESN2 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Trim39Q9ESN2 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Trim39Q9ESN2 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Gm19931-201ENSMUST00000198920 368 ntBASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Gm38671-201ENSMUST00000200573 130 ntBASIC11.82□□□□□ -0.52
Trim39Q9ESN2 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Gm45878-201ENSMUST00000211839 241 ntBASIC11.82□□□□□ -0.52
Trim39Q9ESN2 AC173210.1-201ENSMUST00000222341 1131 ntBASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Crisp4-201ENSMUST00000026876 1252 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Gm5912-201ENSMUST00000122282 1438 ntBASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 AC166574.4-201ENSMUST00000227165 1937 ntBASIC11.82□□□□□ -0.52
Trim39Q9ESN2 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 AC137842.1-201ENSMUST00000227896 2064 ntBASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Gm44401-201ENSMUST00000204462 2375 ntBASIC11.82□□□□□ -0.52
Trim39Q9ESN2 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Trim39Q9ESN2 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Olfr140-202ENSMUST00000111506 3449 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Gm14350-201ENSMUST00000116642 640 ntBASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Gm12490-201ENSMUST00000120255 560 ntBASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Gm18351-201ENSMUST00000188646 883 ntBASIC11.81□□□□□ -0.52
Trim39Q9ESN2 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC11.81□□□□□ -0.52
Trim39Q9ESN2 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Trim39Q9ESN2 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 80.7 ms