Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Gm9333-201ENSMUST00000205452 1323 ntBASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC13.63□□□□□ -0.23
Trim54Q9ERP3 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Gm45495-201ENSMUST00000200940 1700 ntBASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Gm13315-201ENSMUST00000120376 991 ntBASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Mir5120-201ENSMUST00000175020 78 ntBASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Gm39404-201ENSMUST00000216350 313 ntBASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Trim54Q9ERP3 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 AC117194.1-201ENSMUST00000224847 3002 ntBASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Gm14832-201ENSMUST00000121289 322 ntBASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Gm11597-201ENSMUST00000121423 964 ntBASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Mir6979-201ENSMUST00000183927 56 ntBASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Mir6927-201ENSMUST00000184494 71 ntBASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 AC166344.1-202ENSMUST00000224139 234 ntBASIC13.61□□□□□ -0.23
Trim54Q9ERP3 AC125209.1-201ENSMUST00000225812 766 ntBASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Gm8385-201ENSMUST00000058999 643 ntBASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Gm10305-201ENSMUST00000195331 2475 ntBASIC13.61□□□□□ -0.23
Trim54Q9ERP3 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim54Q9ERP3 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim54Q9ERP3 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Trim54Q9ERP3 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 58.5 ms