Protein–RNA interactions for Protein: Q99LI7

Cstf3, Cleavage stimulation factor subunit 3, mousemouse

Known RBP Predictions only

Length 717 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf3Q99LI7 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Gm27847-201ENSMUST00000183711 107 ntBASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Gm27375-201ENSMUST00000183799 107 ntBASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Gm27839-201ENSMUST00000184242 106 ntBASIC12.16□□□□□ -0.46
Cstf3Q99LI7 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Gm42442-201ENSMUST00000197951 1133 ntBASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Cstf3Q99LI7 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Gm13394-201ENSMUST00000121658 1000 ntBASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Gm5035-201ENSMUST00000215581 927 ntBASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Gm32025-201ENSMUST00000217960 307 ntBASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Gm37391-201ENSMUST00000194891 2318 ntBASIC12.15□□□□□ -0.46
Cstf3Q99LI7 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Cstf3Q99LI7 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.47
Cstf3Q99LI7 Gm9279-201ENSMUST00000223175 1606 ntBASIC12.15□□□□□ -0.47
Cstf3Q99LI7 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Cstf3Q99LI7 Gm15897-201ENSMUST00000117770 1486 ntBASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Gm44292-201ENSMUST00000205194 2364 ntBASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Gm15703-201ENSMUST00000120250 880 ntBASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Gm12363-201ENSMUST00000122250 668 ntBASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Gm16296-201ENSMUST00000159905 325 ntBASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Cstf3Q99LI7 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC12.14□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 52.6 ms