Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ushbp1Q8R370 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Gm37391-201ENSMUST00000194891 2318 ntBASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Gm44292-201ENSMUST00000205194 2364 ntBASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Gm9431-201ENSMUST00000119765 1051 ntBASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Gm10371-202ENSMUST00000228010 1081 ntBASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Ushbp1Q8R370 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Ushbp1Q8R370 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Ushbp1Q8R370 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Ushbp1Q8R370 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.15
Ushbp1Q8R370 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Ushbp1Q8R370 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Ushbp1Q8R370 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
Ushbp1Q8R370 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Ushbp1Q8R370 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
Ushbp1Q8R370 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Mospd4-201ENSMUST00000180618 576 ntBASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Gm5363-201ENSMUST00000211927 938 ntBASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Gm44758-201ENSMUST00000206096 2068 ntBASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Ushbp1Q8R370 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Gm15703-201ENSMUST00000120250 880 ntBASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Gm44124-201ENSMUST00000204159 472 ntBASIC14.07□□□□□ -0.16
Ushbp1Q8R370 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC14.07□□□□□ -0.16
Ushbp1Q8R370 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 72.5 ms