Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Rnf220Q6PDX6 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Rnf220Q6PDX6 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Rnf220Q6PDX6 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Rnf220Q6PDX6 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC11.92□□□□□ -0.5
Rnf220Q6PDX6 Sass6-204ENSMUST00000197335 2458 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Rnf220Q6PDX6 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Rnf220Q6PDX6 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Gm38055-201ENSMUST00000195353 2217 ntBASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Tnfaip8l3-201ENSMUST00000098760 4403 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Gm7775-201ENSMUST00000218871 853 ntBASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Bpnt1-201ENSMUST00000027916 2200 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Meltf-201ENSMUST00000023464 4133 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Gm10829-201ENSMUST00000202084 2988 ntBASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Chek1-202ENSMUST00000172702 3797 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Rnf220Q6PDX6 Tbc1d14-202ENSMUST00000124036 2765 ntTSL 5 BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Sp140-201ENSMUST00000080204 2417 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Cxcl12-203ENSMUST00000112871 3132 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Gm14091-201ENSMUST00000133534 874 ntTSL 2 BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Gm37171-201ENSMUST00000192636 1185 ntBASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Tnfaip3-201ENSMUST00000019997 4422 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Gm35960-201ENSMUST00000202712 767 ntBASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Enox1-203ENSMUST00000227662 3064 ntAPPRIS ALT2 BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Prkcd-205ENSMUST00000112207 2139 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Gm42690-201ENSMUST00000197921 1836 ntBASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Gm8798-201ENSMUST00000211877 1661 ntBASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Vasn-201ENSMUST00000038770 2829 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Rnf220Q6PDX6 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 56.7 ms