Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Mir1247-201ENSMUST00000116706 82 ntBASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Gm5370-201ENSMUST00000187187 574 ntBASIC12.19□□□□□ -0.46
Usp39Q3TIX9 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Gm43416-201ENSMUST00000201916 1015 ntBASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Gm44124-201ENSMUST00000204159 472 ntBASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Gm40466-201ENSMUST00000212174 422 ntBASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Gm37472-201ENSMUST00000192342 4052 ntBASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Usp39Q3TIX9 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Gm8213-201ENSMUST00000118191 441 ntBASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Gm14704-201ENSMUST00000120300 874 ntBASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Gm27572-201ENSMUST00000183702 255 ntBASIC12.18□□□□□ -0.46
Usp39Q3TIX9 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Gm42442-201ENSMUST00000197951 1133 ntBASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Gm26035-201ENSMUST00000083065 308 ntBASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Ptprt-203ENSMUST00000109443 12112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Gm14608-201ENSMUST00000120030 1553 ntBASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Gm18222-201ENSMUST00000202416 1387 ntBASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Usp39Q3TIX9 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Gm26684-202ENSMUST00000228229 8257 ntBASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Gm14921-201ENSMUST00000118643 908 ntBASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Gm2639-201ENSMUST00000156881 1297 ntBASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Gm24644-201ENSMUST00000157114 139 ntBASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Gm9124-201ENSMUST00000191789 1092 ntBASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Gm9113-201ENSMUST00000192510 1018 ntBASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Gm9131-201ENSMUST00000193557 1089 ntBASIC12.17□□□□□ -0.46
Usp39Q3TIX9 Gm9121-201ENSMUST00000193749 1071 ntBASIC12.17□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms