Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm5369-201ENSMUST00000217499 588 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 AC167013.1-201ENSMUST00000228592 202 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Rps18-ps3-201ENSMUST00000080443 456 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm25517-201ENSMUST00000083865 134 ntBASIC10.74□□□□□ -0.69
Col8a1Q00780 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
Col8a1Q00780 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
Col8a1Q00780 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
Col8a1Q00780 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
Col8a1Q00780 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC10.74□□□□□ -0.69
Col8a1Q00780 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC10.74□□□□□ -0.69
Col8a1Q00780 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
Col8a1Q00780 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Col8a1Q00780 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Col8a1Q00780 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC10.73□□□□□ -0.69
Col8a1Q00780 Gm38346-201ENSMUST00000192379 2639 ntBASIC10.73□□□□□ -0.69
Col8a1Q00780 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
Col8a1Q00780 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC10.73□□□□□ -0.69
Col8a1Q00780 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Col8a1Q00780 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Col8a1Q00780 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Gm15515-201ENSMUST00000117827 822 ntBASIC10.73□□□□□ -0.69
Col8a1Q00780 Gm13492-201ENSMUST00000119772 665 ntBASIC10.73□□□□□ -0.69
Col8a1Q00780 Gm14460-201ENSMUST00000121511 639 ntBASIC10.73□□□□□ -0.69
Col8a1Q00780 Nop56-204ENSMUST00000136621 868 ntTSL 5 BASIC10.73□□□□□ -0.69
Col8a1Q00780 Gm7666-201ENSMUST00000146631 819 ntBASIC10.73□□□□□ -0.69
Col8a1Q00780 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Gm17391-201ENSMUST00000171036 126 ntBASIC10.73□□□□□ -0.69
Col8a1Q00780 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Aprt-ps-201ENSMUST00000212311 505 ntBASIC10.73□□□□□ -0.69
Col8a1Q00780 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC10.73□□□□□ -0.69
Col8a1Q00780 Gm45925-201ENSMUST00000218882 744 ntBASIC10.73□□□□□ -0.69
Col8a1Q00780 Gm34809-203ENSMUST00000222945 509 ntTSL 5 BASIC10.73□□□□□ -0.69
Col8a1Q00780 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Ankrd7-201ENSMUST00000031489 1190 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Gm6580-201ENSMUST00000117504 1357 ntBASIC10.73□□□□□ -0.69
Col8a1Q00780 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC10.73□□□□□ -0.69
Col8a1Q00780 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Gm2673-201ENSMUST00000120958 1608 ntBASIC10.73□□□□□ -0.69
Col8a1Q00780 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Col8a1Q00780 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC10.72□□□□□ -0.69
Col8a1Q00780 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Gm38094-201ENSMUST00000195864 2978 ntBASIC10.72□□□□□ -0.69
Col8a1Q00780 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Col8a1Q00780 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC10.72□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 70.4 ms