Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC18.99■□□□□ 0.63
Cux1P53564 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC18.99■□□□□ 0.63
Cux1P53564 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Cux1P53564 Gm25517-201ENSMUST00000083865 134 ntBASIC18.99■□□□□ 0.63
Cux1P53564 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cux1P53564 Nphs1os-201ENSMUST00000152625 1339 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Cux1P53564 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cux1P53564 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cux1P53564 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Cux1P53564 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Cux1P53564 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC18.98■□□□□ 0.63
Cux1P53564 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cux1P53564 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cux1P53564 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Cux1P53564 Gm44260-201ENSMUST00000204946 2094 ntBASIC18.98■□□□□ 0.63
Cux1P53564 AC241621.2-201ENSMUST00000223991 2151 ntBASIC18.98■□□□□ 0.63
Cux1P53564 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cux1P53564 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cux1P53564 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Cux1P53564 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Cux1P53564 Gm15566-201ENSMUST00000121130 590 ntBASIC18.98■□□□□ 0.63
Cux1P53564 Mir1901-201ENSMUST00000122616 78 ntBASIC18.98■□□□□ 0.63
Cux1P53564 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC18.98■□□□□ 0.63
Cux1P53564 Gm8815-201ENSMUST00000173809 620 ntBASIC18.98■□□□□ 0.63
Cux1P53564 Gm20714-202ENSMUST00000176436 748 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Cux1P53564 Gm18636-201ENSMUST00000218846 1066 ntBASIC18.98■□□□□ 0.63
Cux1P53564 AC122408.1-201ENSMUST00000218949 218 ntBASIC18.98■□□□□ 0.63
Cux1P53564 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cux1P53564 Gm4735-201ENSMUST00000138679 1302 ntBASIC18.98■□□□□ 0.63
Cux1P53564 Gm5855-201ENSMUST00000200240 1305 ntBASIC18.98■□□□□ 0.63
Cux1P53564 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cux1P53564 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cux1P53564 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cux1P53564 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Cux1P53564 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cux1P53564 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Cux1P53564 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Cux1P53564 Gm43807-201ENSMUST00000200678 1781 ntBASIC18.97■□□□□ 0.63
Cux1P53564 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cux1P53564 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC18.97■□□□□ 0.63
Cux1P53564 Gm11956-201ENSMUST00000119525 512 ntBASIC18.97■□□□□ 0.63
Cux1P53564 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC18.97■□□□□ 0.63
Cux1P53564 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC18.97■□□□□ 0.63
Cux1P53564 Gm21092-201ENSMUST00000178995 955 ntBASIC18.97■□□□□ 0.63
Cux1P53564 Gm34023-201ENSMUST00000195539 217 ntBASIC18.97■□□□□ 0.63
Cux1P53564 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC18.97■□□□□ 0.63
Cux1P53564 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC18.97■□□□□ 0.63
Cux1P53564 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cux1P53564 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Cux1P53564 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Cux1P53564 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cux1P53564 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cux1P53564 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cux1P53564 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cux1P53564 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cux1P53564 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cux1P53564 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Cux1P53564 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Cux1P53564 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cux1P53564 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cux1P53564 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cux1P53564 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Cux1P53564 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Gm7537-201ENSMUST00000221660 1414 ntBASIC18.96■□□□□ 0.63
Cux1P53564 Gm37513-201ENSMUST00000194830 2268 ntBASIC18.96■□□□□ 0.63
Cux1P53564 Gm38378-201ENSMUST00000195153 2268 ntBASIC18.96■□□□□ 0.63
Cux1P53564 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC18.96■□□□□ 0.63
Cux1P53564 Gm12795-201ENSMUST00000117594 539 ntBASIC18.96■□□□□ 0.63
Cux1P53564 Gm11949-201ENSMUST00000117640 372 ntBASIC18.96■□□□□ 0.63
Cux1P53564 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC18.96■□□□□ 0.63
Cux1P53564 Rsph14-207ENSMUST00000179546 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC18.96■□□□□ 0.63
Cux1P53564 Gm44329-201ENSMUST00000197469 112 ntBASIC18.96■□□□□ 0.63
Cux1P53564 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Cux1P53564 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Cux1P53564 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Gm6198-201ENSMUST00000191337 2929 ntBASIC18.96■□□□□ 0.63
Cux1P53564 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC18.96■□□□□ 0.63
Cux1P53564 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Cux1P53564 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.62
Cux1P53564 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Cux1P53564 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 80.6 ms