Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm6473-201ENSMUST00000188572 1210 ntBASIC14.98□□□□□ -0.01
Rfx1P48377 Gm28631-201ENSMUST00000190740 334 ntBASIC14.98□□□□□ -0.01
Rfx1P48377 Wdyhv1-203ENSMUST00000226889 394 ntBASIC14.98□□□□□ -0.01
Rfx1P48377 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Rfx1P48377 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Rfx1P48377 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Rfx1P48377 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Rfx1P48377 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Rfx1P48377 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Rfx1P48377 CT573086.2-201ENSMUST00000227277 4992 ntBASIC14.98□□□□□ -0.01
Rfx1P48377 Gm43727-201ENSMUST00000198021 2647 ntBASIC14.98□□□□□ -0.01
Rfx1P48377 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Rfx1P48377 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Rfx1P48377 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Rfx1P48377 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Rfx1P48377 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
Rfx1P48377 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Rfx1P48377 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Rfx1P48377 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Rfx1P48377 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Rfx1P48377 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Rfx1P48377 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Rfx1P48377 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Rfx1P48377 AC126262.1-201ENSMUST00000221802 1904 ntBASIC14.98□□□□□ -0.01
Rfx1P48377 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Rfx1P48377 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
Rfx1P48377 Gm37660-201ENSMUST00000192754 1732 ntBASIC14.97□□□□□ -0.01
Rfx1P48377 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Rfx1P48377 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Rfx1P48377 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Rfx1P48377 Gm44260-201ENSMUST00000204946 2094 ntBASIC14.97□□□□□ -0.01
Rfx1P48377 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
Rfx1P48377 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Rfx1P48377 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Rfx1P48377 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Rfx1P48377 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Rfx1P48377 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Rfx1P48377 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Rfx1P48377 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Rfx1P48377 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Rfx1P48377 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Rfx1P48377 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Rfx1P48377 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Rfx1P48377 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC14.97□□□□□ -0.01
Rfx1P48377 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC14.97□□□□□ -0.01
Rfx1P48377 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC14.97□□□□□ -0.01
Rfx1P48377 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC14.97□□□□□ -0.01
Rfx1P48377 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC14.97□□□□□ -0.01
Rfx1P48377 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC14.97□□□□□ -0.01
Rfx1P48377 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Rfx1P48377 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC14.97□□□□□ -0.01
Rfx1P48377 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Rfx1P48377 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Rfx1P48377 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC14.97□□□□□ -0.01
Rfx1P48377 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Rfx1P48377 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Rfx1P48377 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Rfx1P48377 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Rfx1P48377 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
Rfx1P48377 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Rfx1P48377 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Rfx1P48377 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC14.96□□□□□ -0.01
Rfx1P48377 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Rfx1P48377 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Rfx1P48377 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Rfx1P48377 Rgs3-205ENSMUST00000107424 4084 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Rfx1P48377 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC14.96□□□□□ -0.01
Rfx1P48377 Gm13394-201ENSMUST00000121658 1000 ntBASIC14.96□□□□□ -0.01
Rfx1P48377 Gm14760-201ENSMUST00000121831 999 ntBASIC14.96□□□□□ -0.01
Rfx1P48377 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Rfx1P48377 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC14.96□□□□□ -0.01
Rfx1P48377 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Rfx1P48377 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC14.96□□□□□ -0.01
Rfx1P48377 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Rfx1P48377 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC14.96□□□□□ -0.01
Rfx1P48377 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC14.96□□□□□ -0.01
Rfx1P48377 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Rfx1P48377 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Rfx1P48377 Rangap1-202ENSMUST00000170134 3002 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Rfx1P48377 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
Rfx1P48377 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC14.96□□□□□ -0.01
Rfx1P48377 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC14.96□□□□□ -0.02
Rfx1P48377 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Rfx1P48377 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Rfx1P48377 Gm26584-201ENSMUST00000180551 3216 ntTSL 5 BASIC14.96□□□□□ -0.02
Rfx1P48377 Gm37105-201ENSMUST00000192251 2085 ntBASIC14.96□□□□□ -0.02
Rfx1P48377 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Rfx1P48377 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Rfx1P48377 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
Rfx1P48377 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
Rfx1P48377 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Rfx1P48377 Gm14608-201ENSMUST00000120030 1553 ntBASIC14.95□□□□□ -0.02
Rfx1P48377 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Rfx1P48377 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Rfx1P48377 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Rfx1P48377 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Rfx1P48377 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Rfx1P48377 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Rfx1P48377 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Rfx1P48377 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 72.8 ms