Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Col5a1O88207 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC11.18□□□□□ -0.62
Col5a1O88207 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col5a1O88207 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Col5a1O88207 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Gm22133-201ENSMUST00000102082 109 ntBASIC11.17□□□□□ -0.62
Col5a1O88207 Mir671-201ENSMUST00000102432 98 ntBASIC11.17□□□□□ -0.62
Col5a1O88207 Gm5419-201ENSMUST00000119301 527 ntBASIC11.17□□□□□ -0.62
Col5a1O88207 Bach2os-202ENSMUST00000136149 687 ntTSL 2 BASIC11.17□□□□□ -0.62
Col5a1O88207 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC11.17□□□□□ -0.62
Col5a1O88207 1810021B22Rik-201ENSMUST00000150364 652 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC11.17□□□□□ -0.62
Col5a1O88207 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC11.17□□□□□ -0.62
Col5a1O88207 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Gm43520-201ENSMUST00000197996 164 ntBASIC11.17□□□□□ -0.62
Col5a1O88207 Gm7551-201ENSMUST00000089593 1074 ntBASIC11.17□□□□□ -0.62
Col5a1O88207 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 AC171277.1-201ENSMUST00000216902 1441 ntBASIC11.17□□□□□ -0.62
Col5a1O88207 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Drg1-201ENSMUST00000020741 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
Col5a1O88207 Gm28323-201ENSMUST00000186817 2499 ntBASIC11.17□□□□□ -0.62
Col5a1O88207 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Col5a1O88207 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Col5a1O88207 Gm12948-201ENSMUST00000119406 682 ntBASIC11.16□□□□□ -0.62
Col5a1O88207 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC11.16□□□□□ -0.62
Col5a1O88207 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Col5a1O88207 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC11.16□□□□□ -0.62
Col5a1O88207 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC11.16□□□□□ -0.62
Col5a1O88207 Them5-201ENSMUST00000029794 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Prss51-201ENSMUST00000063785 961 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
Col5a1O88207 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC11.16□□□□□ -0.62
Col5a1O88207 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Col5a1O88207 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC11.16□□□□□ -0.62
Col5a1O88207 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC11.16□□□□□ -0.62
Col5a1O88207 Sln-201ENSMUST00000048485 1318 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC11.16□□□□□ -0.62
Col5a1O88207 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Gm45605-201ENSMUST00000210265 4269 ntBASIC11.16□□□□□ -0.62
Col5a1O88207 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC11.16□□□□□ -0.62
Col5a1O88207 Gm22144-201ENSMUST00000157402 102 ntBASIC11.16□□□□□ -0.62
Col5a1O88207 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC11.16□□□□□ -0.62
Col5a1O88207 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC11.16□□□□□ -0.62
Col5a1O88207 Med8-201ENSMUST00000019229 1145 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 AC166341.2-201ENSMUST00000220571 120 ntBASIC11.16□□□□□ -0.62
Col5a1O88207 Rpl3l-201ENSMUST00000045186 1033 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC11.16□□□□□ -0.62
Col5a1O88207 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Gm28719-201ENSMUST00000187779 1757 ntBASIC11.16□□□□□ -0.62
Col5a1O88207 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 Tmem39a-204ENSMUST00000163884 1645 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Col5a1O88207 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC11.16□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 62.8 ms