Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 AC125350.2-201ENSMUST00000224737 727 ntBASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Gm10268-201ENSMUST00000085340 555 ntBASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Gm3052-202ENSMUST00000188254 2224 ntBASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Gm37324-201ENSMUST00000194500 4504 ntBASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC11.88□□□□□ -0.51
Trim3Q9R1R2 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Gm23931-201ENSMUST00000103842 109 ntBASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Gm28693-202ENSMUST00000190758 331 ntBASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Gm38297-201ENSMUST00000195122 1057 ntBASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Gm43630-201ENSMUST00000201550 776 ntBASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Gm37437-201ENSMUST00000194451 1937 ntBASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Gm8617-201ENSMUST00000118796 2222 ntBASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Trim3Q9R1R2 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Gm11637-201ENSMUST00000120601 592 ntBASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Gm8062-201ENSMUST00000139696 444 ntBASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Tyms-ps-201ENSMUST00000219550 915 ntBASIC11.86□□□□□ -0.51
Trim3Q9R1R2 AC093022.5-201ENSMUST00000226841 1079 ntBASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Gm9899-201ENSMUST00000065519 555 ntBASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Gm12846-201ENSMUST00000120431 1373 ntBASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trim3Q9R1R2 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC11.86□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 49.7 ms