Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdc40Q9DC48 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdc40Q9DC48 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdc40Q9DC48 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC11.72□□□□□ -0.53
Cdc40Q9DC48 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cdc40Q9DC48 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdc40Q9DC48 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC11.72□□□□□ -0.53
Cdc40Q9DC48 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Flnc-201ENSMUST00000065090 9038 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Gm11591-201ENSMUST00000120063 702 ntBASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Gm12291-201ENSMUST00000121627 311 ntBASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Gm17208-201ENSMUST00000168388 535 ntBASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Gm2991-201ENSMUST00000173338 480 ntBASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Gm38341-201ENSMUST00000195357 515 ntBASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdc40Q9DC48 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdc40Q9DC48 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdc40Q9DC48 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdc40Q9DC48 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
Cdc40Q9DC48 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdc40Q9DC48 Mecom-202ENSMUST00000108270 5692 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
Cdc40Q9DC48 Dnpep-203ENSMUST00000185419 2833 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Cdc40Q9DC48 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
Cdc40Q9DC48 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdc40Q9DC48 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
Cdc40Q9DC48 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdc40Q9DC48 Gm44414-201ENSMUST00000203660 2109 ntBASIC11.71□□□□□ -0.54
Cdc40Q9DC48 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdc40Q9DC48 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdc40Q9DC48 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdc40Q9DC48 Gpr17-201ENSMUST00000064016 5195 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdc40Q9DC48 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdc40Q9DC48 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdc40Q9DC48 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Gm12363-201ENSMUST00000122250 668 ntBASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdc40Q9DC48 Gm42863-201ENSMUST00000197875 2958 ntBASIC11.7□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 66.7 ms