Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Gm5904-201ENSMUST00000210286 865 ntBASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 AL732506.1-201ENSMUST00000226420 281 ntBASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Gm44758-201ENSMUST00000206096 2068 ntBASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Ddx56Q9D0R4 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Gm7789-202ENSMUST00000211273 1400 ntBASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Gm5780-201ENSMUST00000217774 1834 ntBASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Gm3287-205ENSMUST00000228893 1332 ntBASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Paupar-201ENSMUST00000194826 3482 ntBASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Gm9431-201ENSMUST00000119765 1051 ntBASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Gm2420-201ENSMUST00000119864 2149 ntBASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Mir1982-201ENSMUST00000157368 74 ntBASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Gm8738-201ENSMUST00000172606 329 ntBASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Gm44124-201ENSMUST00000204159 472 ntBASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Gm5781-201ENSMUST00000219792 443 ntBASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 AC108416.1-202ENSMUST00000228927 1201 ntBASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Gm43677-201ENSMUST00000198098 2378 ntBASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Daam2-202ENSMUST00000224595 1926 ntBASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Ddx56Q9D0R4 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC13.22□□□□□ -0.29
Ddx56Q9D0R4 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms