Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Smc1aQ9CU62 Phrf1-202ENSMUST00000122143 4864 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Gm45684-201ENSMUST00000210244 1571 ntBASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Gm5989-201ENSMUST00000096092 2077 ntBASIC14.1□□□□□ -0.15
Smc1aQ9CU62 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Gm16379-201ENSMUST00000161469 348 ntBASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Gm7029-201ENSMUST00000173226 450 ntBASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Gm8762-201ENSMUST00000193486 339 ntBASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Gm43758-201ENSMUST00000199500 367 ntBASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Olfr284-202ENSMUST00000206647 966 ntBASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 AC154462.2-201ENSMUST00000227519 370 ntBASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Gm24526-201ENSMUST00000082921 158 ntBASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Gm8706-201ENSMUST00000197372 1491 ntBASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Smc1aQ9CU62 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.15
Smc1aQ9CU62 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.15
Smc1aQ9CU62 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Smc1aQ9CU62 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Smc1aQ9CU62 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Smc1aQ9CU62 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Smc1aQ9CU62 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Smc1aQ9CU62 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Adra1a-206ENSMUST00000225182 2337 ntBASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Gm12241-201ENSMUST00000118330 726 ntBASIC14.08□□□□□ -0.16
Smc1aQ9CU62 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Gm4857-201ENSMUST00000192718 785 ntBASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Gm4935-201ENSMUST00000221316 1198 ntBASIC14.08□□□□□ -0.16
Smc1aQ9CU62 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms