Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Clp1Q99LI9 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Clp1Q99LI9 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Clp1Q99LI9 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Clp1Q99LI9 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Clp1Q99LI9 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Clp1Q99LI9 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Clp1Q99LI9 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Clp1Q99LI9 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Clp1Q99LI9 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Clp1Q99LI9 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Clp1Q99LI9 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Clp1Q99LI9 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC13.25□□□□□ -0.29
Clp1Q99LI9 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC13.25□□□□□ -0.29
Clp1Q99LI9 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC13.25□□□□□ -0.29
Clp1Q99LI9 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC13.25□□□□□ -0.29
Clp1Q99LI9 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC13.25□□□□□ -0.29
Clp1Q99LI9 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC13.24□□□□□ -0.29
Clp1Q99LI9 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Gm23119-201ENSMUST00000158610 140 ntBASIC13.24□□□□□ -0.29
Clp1Q99LI9 Gm8194-201ENSMUST00000159783 859 ntBASIC13.24□□□□□ -0.29
Clp1Q99LI9 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Mir6546-201ENSMUST00000184460 62 ntBASIC13.24□□□□□ -0.29
Clp1Q99LI9 Ighv4-2-201ENSMUST00000192975 362 ntBASIC13.24□□□□□ -0.29
Clp1Q99LI9 Gm44958-201ENSMUST00000203734 736 ntBASIC13.24□□□□□ -0.29
Clp1Q99LI9 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Gm5455-201ENSMUST00000058710 715 ntBASIC13.24□□□□□ -0.29
Clp1Q99LI9 Klk1b7-ps-201ENSMUST00000078897 448 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC13.24□□□□□ -0.29
Clp1Q99LI9 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC13.23□□□□□ -0.29
Clp1Q99LI9 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC13.23□□□□□ -0.29
Clp1Q99LI9 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Cdc42se1-201ENSMUST00000053872 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Gm14460-201ENSMUST00000121511 639 ntBASIC13.23□□□□□ -0.29
Clp1Q99LI9 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Gm23085-201ENSMUST00000157849 293 ntBASIC13.23□□□□□ -0.29
Clp1Q99LI9 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Gm9022-201ENSMUST00000182482 992 ntBASIC13.23□□□□□ -0.29
Clp1Q99LI9 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Gm37246-201ENSMUST00000192665 835 ntBASIC13.23□□□□□ -0.29
Clp1Q99LI9 2210412B16Rik-201ENSMUST00000201281 498 ntBASIC13.23□□□□□ -0.29
Clp1Q99LI9 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC13.23□□□□□ -0.29
Clp1Q99LI9 AC154305.4-201ENSMUST00000224520 614 ntBASIC13.23□□□□□ -0.29
Clp1Q99LI9 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Ginm1-202ENSMUST00000065124 300 ntBASIC13.23□□□□□ -0.29
Clp1Q99LI9 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Clp1Q99LI9 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms