Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Gm7029-201ENSMUST00000173226 450 ntBASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Gm37008-201ENSMUST00000195712 319 ntBASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Gm18054-201ENSMUST00000207539 555 ntBASIC11.23□□□□□ -0.61
Ube3dQ8BX13 AC154276.1-201ENSMUST00000228874 1299 ntBASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Gm38049-201ENSMUST00000195698 1372 ntBASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Gm42853-201ENSMUST00000201273 1387 ntBASIC11.23□□□□□ -0.61
Ube3dQ8BX13 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 AC159195.1-201ENSMUST00000225867 2086 ntBASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Ube3dQ8BX13 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Gm5940-201ENSMUST00000117582 1068 ntBASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Gm14608-201ENSMUST00000120030 1553 ntBASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Gm9025-201ENSMUST00000122415 1575 ntBASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 2210412B16Rik-201ENSMUST00000201281 498 ntBASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Gm43930-201ENSMUST00000203868 845 ntBASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Gm6013-201ENSMUST00000212264 699 ntBASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 AC122305.4-201ENSMUST00000216159 1206 ntBASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Tyms-ps-201ENSMUST00000219550 915 ntBASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Daam2-202ENSMUST00000224595 1926 ntBASIC11.22□□□□□ -0.61
Ube3dQ8BX13 AC113060.1-201ENSMUST00000225689 1573 ntBASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Gm7399-201ENSMUST00000032395 858 ntBASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Ube3dQ8BX13 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Gm11661-201ENSMUST00000121761 1327 ntBASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
Ube3dQ8BX13 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC11.21□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms