Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC11.45□□□□□ -0.58
Usf1Q61069 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Usf1Q61069 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC11.45□□□□□ -0.58
Usf1Q61069 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Gm5525-201ENSMUST00000190438 1312 ntBASIC11.45□□□□□ -0.58
Usf1Q61069 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Usf1Q61069 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Usf1Q61069 Gm22133-201ENSMUST00000102082 109 ntBASIC11.45□□□□□ -0.58
Usf1Q61069 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Usf1Q61069 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Usf1Q61069 Gm16397-201ENSMUST00000122201 494 ntBASIC11.45□□□□□ -0.58
Usf1Q61069 Rbm18-202ENSMUST00000122456 781 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC11.45□□□□□ -0.58
Usf1Q61069 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
Usf1Q61069 Gm9540-201ENSMUST00000188230 478 ntBASIC11.45□□□□□ -0.58
Usf1Q61069 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC11.45□□□□□ -0.58
Usf1Q61069 Gm7600-201ENSMUST00000209657 785 ntBASIC11.45□□□□□ -0.58
Usf1Q61069 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC11.45□□□□□ -0.58
Usf1Q61069 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC11.45□□□□□ -0.58
Usf1Q61069 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC11.45□□□□□ -0.58
Usf1Q61069 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC11.45□□□□□ -0.58
Usf1Q61069 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Sst-201ENSMUST00000004480 599 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Usf1Q61069 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Usf1Q61069 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC11.45□□□□□ -0.58
Usf1Q61069 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
Usf1Q61069 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC11.45□□□□□ -0.58
Usf1Q61069 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Usf1Q61069 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Usf1Q61069 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Usf1Q61069 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC11.45□□□□□ -0.58
Usf1Q61069 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC11.45□□□□□ -0.58
Usf1Q61069 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC11.44□□□□□ -0.58
Usf1Q61069 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC11.44□□□□□ -0.58
Usf1Q61069 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Usf1Q61069 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Usf1Q61069 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Selenot-ps-201ENSMUST00000119098 593 ntBASIC11.44□□□□□ -0.58
Usf1Q61069 Gm14460-201ENSMUST00000121511 639 ntBASIC11.44□□□□□ -0.58
Usf1Q61069 Gm5778-201ENSMUST00000171003 1072 ntBASIC11.44□□□□□ -0.58
Usf1Q61069 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC11.44□□□□□ -0.58
Usf1Q61069 Mir7677-201ENSMUST00000184226 67 ntBASIC11.44□□□□□ -0.58
Usf1Q61069 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC11.44□□□□□ -0.58
Usf1Q61069 Gm37246-201ENSMUST00000192665 835 ntBASIC11.44□□□□□ -0.58
Usf1Q61069 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC11.44□□□□□ -0.58
Usf1Q61069 Gm10752-201ENSMUST00000218348 729 ntBASIC11.44□□□□□ -0.58
Usf1Q61069 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Rln1-201ENSMUST00000044143 745 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Txndc2-201ENSMUST00000050236 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC11.44□□□□□ -0.58
Usf1Q61069 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Usf1Q61069 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Usf1Q61069 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Usf1Q61069 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC11.43□□□□□ -0.58
Usf1Q61069 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 77.2 ms