Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC12.01□□□□□ -0.49
Nr1h4Q60641 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Nr1h4Q60641 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nr1h4Q60641 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Nr1h4Q60641 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nr1h4Q60641 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nr1h4Q60641 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC12.01□□□□□ -0.49
Nr1h4Q60641 Scn10a-201ENSMUST00000084787 6416 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
Nr1h4Q60641 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Nr1h4Q60641 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nr1h4Q60641 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC12.01□□□□□ -0.49
Nr1h4Q60641 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Nr1h4Q60641 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nr1h4Q60641 Dnm3-202ENSMUST00000086074 7523 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Nr1h4Q60641 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nr1h4Q60641 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nr1h4Q60641 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nr1h4Q60641 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nr1h4Q60641 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nr1h4Q60641 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nr1h4Q60641 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC12□□□□□ -0.49
Nr1h4Q60641 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC12□□□□□ -0.49
Nr1h4Q60641 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC12□□□□□ -0.49
Nr1h4Q60641 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC12□□□□□ -0.49
Nr1h4Q60641 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC12□□□□□ -0.49
Nr1h4Q60641 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC12□□□□□ -0.49
Nr1h4Q60641 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC12□□□□□ -0.49
Nr1h4Q60641 Daam2-202ENSMUST00000224595 1926 ntBASIC12□□□□□ -0.49
Nr1h4Q60641 AC166574.4-201ENSMUST00000227165 1937 ntBASIC12□□□□□ -0.49
Nr1h4Q60641 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Nr1h4Q60641 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Gm15920-201ENSMUST00000118998 402 ntBASIC12□□□□□ -0.49
Nr1h4Q60641 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC12□□□□□ -0.49
Nr1h4Q60641 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC12□□□□□ -0.49
Nr1h4Q60641 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Gm42929-201ENSMUST00000198374 1286 ntBASIC12□□□□□ -0.49
Nr1h4Q60641 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC12□□□□□ -0.49
Nr1h4Q60641 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 AC124577.2-201ENSMUST00000217413 2420 ntBASIC12□□□□□ -0.49
Nr1h4Q60641 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Nr1h4Q60641 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC12□□□□□ -0.49
Nr1h4Q60641 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Surf6-201ENSMUST00000047632 2971 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nr1h4Q60641 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Gm26857-201ENSMUST00000181580 3347 ntTSL 5 BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Nr1h4Q60641 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC11.99□□□□□ -0.49
Nr1h4Q60641 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Gm43416-201ENSMUST00000201916 1015 ntBASIC11.99□□□□□ -0.49
Nr1h4Q60641 Gm20949-201ENSMUST00000206478 952 ntBASIC11.99□□□□□ -0.49
Nr1h4Q60641 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC11.99□□□□□ -0.49
Nr1h4Q60641 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Gm10371-202ENSMUST00000228010 1081 ntBASIC11.99□□□□□ -0.49
Nr1h4Q60641 Gm5867-201ENSMUST00000063197 592 ntBASIC11.99□□□□□ -0.49
Nr1h4Q60641 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Gpr158-201ENSMUST00000055946 7171 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
Nr1h4Q60641 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 75.7 ms